Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06f
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    27   3.1  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   9.5  

>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 430 ITVAEYMHIVTTNPTEGYYMK 492
           +++A+Y+H  T +P++GYY +
Sbjct: 59  VSLADYIHESTFDPSKGYYSR 79


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 634 GPSSTICSGFASHIFCVQHKTKYL 563
           GP+S+  S  +S IFCV H+ +Y+
Sbjct: 20  GPASSSTS-HSSTIFCVHHRVRYI 42


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 304  LTREYSYKTIKRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITVAEYM 450
            L R  +Y T K      L++   +S  N+   +  K  + GP+ ++EY+
Sbjct: 992  LLRHLTYATAKLITETFLQITPTQSRSNVSSSLIGKETVEGPVKLSEYV 1040


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,167
Number of Sequences: 5004
Number of extensions: 40775
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)