BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b06f (655 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455... 63 2e-10 06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 29 2.4 03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 29 4.3 03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 28 7.5 >01_05_0526 + 22944889-22944999,22945207-22945317,22945397-22945592, 22946454-22946512,22946761-22946958,22947233-22947341, 22947431-22947696 Length = 349 Score = 63.3 bits (147), Expect = 2e-10 Identities = 24/42 (57%), Positives = 33/42 (78%) Frame = +1 Query: 448 MHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEILGIW 573 M V TNP G+Y+ ++V G +GDFITSPE+SQ+FGE+ G+W Sbjct: 1 MEEVLTNPQSGFYINRDVFGTSGDFITSPEVSQMFGEMTGVW 42 >06_03_1303 + 29180837-29181205,29181289-29181306,29181337-29181622, 29185008-29186284,29186499-29187005 Length = 818 Score = 29.5 bits (63), Expect = 2.4 Identities = 30/126 (23%), Positives = 49/126 (38%) Frame = +1 Query: 205 KYIKKSVKMSLIKCTQMNSRILLNMCKYDSPRFLTREYSYKTIKRPDPRTLKMPTPESAP 384 KY+ S K+ Q+ ++ + +YD RE K ++ P P P+P +P Sbjct: 485 KYVPVSEKLKDFIYAQLEEKVR-RLSEYDKRMERERERERKRVRAPSPSPS--PSPSPSP 541 Query: 385 NLIEIIKEKIRLNGPITVAEYMHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEIL 564 + + + T + M+ + T+ MKKE I + E F E L Sbjct: 542 SASATTPTQTGTSTTTTTSS-MYSILTDCRGDQVMKKERISNLSWSLEKKE----FDESL 596 Query: 565 GIWFYA 582 IW A Sbjct: 597 LIWHIA 602 >03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700, 4709780-4710462,4710618-4710980,4712199-4712530, 4712856-4713048,4713748-4713790,4713964-4714052, 4714186-4714301,4714816-4714935,4715538-4715577 Length = 1003 Score = 28.7 bits (61), Expect = 4.3 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = +1 Query: 373 ESAPNLIEIIKEKIRLNGPITVAEYMH-IVTTNPTEGYYMKKEVIGEAGDFITSPEISQL 549 E A N+IE GP+ + + IV +PT Y K + G+F++S E+ +L Sbjct: 389 EEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTYAGSKTRVFIKGNFLSSDEVKRL 448 >03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904, 33319949-33320011,33320103-33320496,33320684-33320796, 33320932-33321639,33321667-33323199,33323395-33323607, 33323718-33324700,33324890-33325423,33325694-33325820, 33326083-33326162,33327347-33327377,33327949-33328053, 33328119-33328124,33328349-33328985,33329144-33329478, 33330394-33331113 Length = 2792 Score = 27.9 bits (59), Expect = 7.5 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 479 PSVGLVVTICIYSATVIGPFNLIFSFIISIKFGADSGVGIFRVLGSG 339 PS+ L T C S ++GP +L +I FG+++ V R+ +G Sbjct: 2541 PSLDLTKTQCENSEDIVGPVDLEGDWITEDDFGSENTVLAERIGATG 2587 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,463,319 Number of Sequences: 37544 Number of extensions: 219066 Number of successful extensions: 535 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 514 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 535 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1632177336 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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