Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06f
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455...    63   2e-10
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    29   2.4  
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    29   4.3  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    28   7.5  

>01_05_0526 +
           22944889-22944999,22945207-22945317,22945397-22945592,
           22946454-22946512,22946761-22946958,22947233-22947341,
           22947431-22947696
          Length = 349

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 24/42 (57%), Positives = 33/42 (78%)
 Frame = +1

Query: 448 MHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEILGIW 573
           M  V TNP  G+Y+ ++V G +GDFITSPE+SQ+FGE+ G+W
Sbjct: 1   MEEVLTNPQSGFYINRDVFGTSGDFITSPEVSQMFGEMTGVW 42


>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 30/126 (23%), Positives = 49/126 (38%)
 Frame = +1

Query: 205 KYIKKSVKMSLIKCTQMNSRILLNMCKYDSPRFLTREYSYKTIKRPDPRTLKMPTPESAP 384
           KY+  S K+      Q+  ++   + +YD      RE   K ++ P P     P+P  +P
Sbjct: 485 KYVPVSEKLKDFIYAQLEEKVR-RLSEYDKRMERERERERKRVRAPSPSPS--PSPSPSP 541

Query: 385 NLIEIIKEKIRLNGPITVAEYMHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEIL 564
           +       +   +   T +  M+ + T+      MKKE I      +   E    F E L
Sbjct: 542 SASATTPTQTGTSTTTTTSS-MYSILTDCRGDQVMKKERISNLSWSLEKKE----FDESL 596

Query: 565 GIWFYA 582
            IW  A
Sbjct: 597 LIWHIA 602


>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 373 ESAPNLIEIIKEKIRLNGPITVAEYMH-IVTTNPTEGYYMKKEVIGEAGDFITSPEISQL 549
           E A N+IE         GP+   + +  IV  +PT  Y   K  +   G+F++S E+ +L
Sbjct: 389 EEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTYAGSKTRVFIKGNFLSSDEVKRL 448


>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 479  PSVGLVVTICIYSATVIGPFNLIFSFIISIKFGADSGVGIFRVLGSG 339
            PS+ L  T C  S  ++GP +L   +I    FG+++ V   R+  +G
Sbjct: 2541 PSLDLTKTQCENSEDIVGPVDLEGDWITEDDFGSENTVLAERIGATG 2587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,319
Number of Sequences: 37544
Number of extensions: 219066
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)