Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06f
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     28   5.8  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_5553| Best HMM Match : Toxin_20 (HMM E-Value=4.6)                   28   7.6  

>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 304  LTREYSYKTIKRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITV 438
            + R Y       P     K P PES   +IE+++EK+  +G I++
Sbjct: 1314 IERLYGNDDSPPPSNNKTKSPIPESEAGVIELLQEKVISDGKISM 1358


>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 304  LTREYSYKTIKRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITV 438
            + R Y       P     K P PES   +IE+++EK+  +G I++
Sbjct: 903  IERLYGNDDSPPPSNNKTKSPIPESEAGVIELLQEKVISDGKISM 947


>SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 304 LTREYSYKTIKRPDPRTLKMPTPESAPNLIEIIKEKIRL 420
           L R++ Y  ++R D   +K P P   PN + ++   +RL
Sbjct: 129 LKRQHPY-AVRRTDDGPIKRPRPPLTPNRLSVLVSALRL 166


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 442  EYMHIVTTNPTEGYYMKKEVIGEAGDFITSP 534
            EY H V  N T  YY       E GDF+  P
Sbjct: 1931 EYGHAVERNFTNPYYFPVNESDEIGDFVVRP 1961


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/38 (28%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +3

Query: 132 KNVKP--ETLLQSKKKRESNRKQDKIEIY*KISQNESN 239
           K +KP  + +L++K+K +S +K+D++++   +++ E N
Sbjct: 300 KRLKPKKDQVLEAKRKEDSEKKRDEVKLNKFLAEREEN 337


>SB_5553| Best HMM Match : Toxin_20 (HMM E-Value=4.6)
          Length = 299

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 304 LTREYSYKTIKRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITV 438
           + R Y       P     + P PES   +IE+++EK+  +G I++
Sbjct: 208 IERLYGNDDSPPPSNNKTESPIPESEAGVIELLQEKVISDGKISM 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,950,188
Number of Sequences: 59808
Number of extensions: 263689
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)