BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b06f (655 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636... 84 7e-17 At5g49410.1 68418.m06114 expressed protein similar to unknown pr... 30 1.2 >At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636: Uncharacterized ACR, COG1565 Length = 471 Score = 84.2 bits (199), Expect = 7e-17 Identities = 40/78 (51%), Positives = 51/78 (65%) Frame = +1 Query: 340 PDPRTLKMPTPESAPNLIEIIKEKIRLNGPITVAEYMHIVTTNPTEGYYMKKEVIGEAGD 519 PD P E +L IIK + GPI+VAEYM V TNP G+YM ++V G GD Sbjct: 66 PDHSHESTPDSELVKHLKSIIKFR---GGPISVAEYMEEVLTNPKAGFYMNRDVFGAQGD 122 Query: 520 FITSPEISQLFGEILGIW 573 FITSPE+SQ+FGE++G+W Sbjct: 123 FITSPEVSQMFGEMIGVW 140 >At5g49410.1 68418.m06114 expressed protein similar to unknown protein (gb|AAF36742.1) Length = 145 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +1 Query: 304 LTREYSYKTIKRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITVAE 444 LTR ++ K + P L P PE + +I + ++ +GP+T+AE Sbjct: 20 LTRHFATKPKPKMKPIELNTP-PEQTQTITRVIFDILKDHGPLTIAE 65 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,826,509 Number of Sequences: 28952 Number of extensions: 196651 Number of successful extensions: 472 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 471 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1363910256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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