Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b06f
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636...    84   7e-17
At5g49410.1 68418.m06114 expressed protein similar to unknown pr...    30   1.2  

>At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636:
           Uncharacterized ACR, COG1565
          Length = 471

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 40/78 (51%), Positives = 51/78 (65%)
 Frame = +1

Query: 340 PDPRTLKMPTPESAPNLIEIIKEKIRLNGPITVAEYMHIVTTNPTEGYYMKKEVIGEAGD 519
           PD      P  E   +L  IIK +    GPI+VAEYM  V TNP  G+YM ++V G  GD
Sbjct: 66  PDHSHESTPDSELVKHLKSIIKFR---GGPISVAEYMEEVLTNPKAGFYMNRDVFGAQGD 122

Query: 520 FITSPEISQLFGEILGIW 573
           FITSPE+SQ+FGE++G+W
Sbjct: 123 FITSPEVSQMFGEMIGVW 140


>At5g49410.1 68418.m06114 expressed protein similar to unknown
           protein (gb|AAF36742.1)
          Length = 145

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 304 LTREYSYKTIKRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITVAE 444
           LTR ++ K   +  P  L  P PE    +  +I + ++ +GP+T+AE
Sbjct: 20  LTRHFATKPKPKMKPIELNTP-PEQTQTITRVIFDILKDHGPLTIAE 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,509
Number of Sequences: 28952
Number of extensions: 196651
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)