BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b05r (689 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 28 0.096 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 25 0.90 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 25 0.90 DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 24 1.2 DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 22 4.8 DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 6.3 DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 6.3 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 6.3 EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 8.4 EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 8.4 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 27.9 bits (59), Expect = 0.096 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +3 Query: 534 PTLGTPLTAVLYRPLARPRQST 599 P +GTP T ++Y+P P Q++ Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 24.6 bits (51), Expect = 0.90 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 584 TTPVHNNNVAVGDGQQGGAE 643 + P +N + GDG++GGAE Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 24.6 bits (51), Expect = 0.90 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 584 TTPVHNNNVAVGDGQQGGAE 643 + P +N + GDG++GGAE Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067 >DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor 2 protein. Length = 581 Score = 24.2 bits (50), Expect = 1.2 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 356 TTPPGPSRIQTGNPVGSATSLSSS 427 TTP PSR Q+ + SA ++S+S Sbjct: 530 TTPVLPSRFQSHPSIDSANTISNS 553 >DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein protein. Length = 486 Score = 22.2 bits (45), Expect = 4.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 192 RL*EQVLTLQPGWGFLPPLG*KSP 263 R+ + LQPG F PLG + P Sbjct: 458 RMDRDAVYLQPGMSFGEPLGLRRP 481 >DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride channel protein. Length = 447 Score = 21.8 bits (44), Expect = 6.3 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = -1 Query: 674 ATETSAVNTMIPP 636 AT+TS +N +PP Sbjct: 285 ATQTSGINASLPP 297 >DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride channel protein. Length = 447 Score = 21.8 bits (44), Expect = 6.3 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = -1 Query: 674 ATETSAVNTMIPP 636 AT+TS +N +PP Sbjct: 285 ATQTSGINASLPP 297 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 21.8 bits (44), Expect = 6.3 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -1 Query: 689 STAGTATETSAVNTMIPPR 633 + AGTA+ ++ + +PPR Sbjct: 662 NAAGTASHSTTLTVNVPPR 680 >EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. Length = 686 Score = 21.4 bits (43), Expect = 8.4 Identities = 7/17 (41%), Positives = 11/17 (64%) Frame = -3 Query: 432 VTLDDRLVADPTGLPVW 382 +TLDD++ P P+W Sbjct: 643 MTLDDKVFGFPLDRPMW 659 >EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. Length = 686 Score = 21.4 bits (43), Expect = 8.4 Identities = 7/17 (41%), Positives = 11/17 (64%) Frame = -3 Query: 432 VTLDDRLVADPTGLPVW 382 +TLDD++ P P+W Sbjct: 643 MTLDDKVFGFPLDRPMW 659 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 227,957 Number of Sequences: 438 Number of extensions: 5744 Number of successful extensions: 20 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 20 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 21073995 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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