Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b05r
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.096
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.90 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.90 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.096
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 534 PTLGTPLTAVLYRPLARPRQST 599
           P +GTP T ++Y+P   P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 584  TTPVHNNNVAVGDGQQGGAE 643
            + P +N +   GDG++GGAE
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 584  TTPVHNNNVAVGDGQQGGAE 643
            + P +N +   GDG++GGAE
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 356 TTPPGPSRIQTGNPVGSATSLSSS 427
           TTP  PSR Q+   + SA ++S+S
Sbjct: 530 TTPVLPSRFQSHPSIDSANTISNS 553


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 192 RL*EQVLTLQPGWGFLPPLG*KSP 263
           R+    + LQPG  F  PLG + P
Sbjct: 458 RMDRDAVYLQPGMSFGEPLGLRRP 481


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 674 ATETSAVNTMIPP 636
           AT+TS +N  +PP
Sbjct: 285 ATQTSGINASLPP 297


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 674 ATETSAVNTMIPP 636
           AT+TS +N  +PP
Sbjct: 285 ATQTSGINASLPP 297


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 689 STAGTATETSAVNTMIPPR 633
           + AGTA+ ++ +   +PPR
Sbjct: 662 NAAGTASHSTTLTVNVPPR 680


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 432 VTLDDRLVADPTGLPVW 382
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 432 VTLDDRLVADPTGLPVW 382
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,957
Number of Sequences: 438
Number of extensions: 5744
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)