BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b05f (652 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.25 SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 28 1.3 SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.1 SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.1 SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.1 SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 4.1 SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 4.1 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 5.4 SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 7.2 SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.2 SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 9.5 SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 9.5 SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.5 >SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 262 Score = 30.3 bits (65), Expect = 0.25 Identities = 15/72 (20%), Positives = 33/72 (45%) Frame = -1 Query: 619 SATSLSSSXTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 440 S +S +++ + + + ++ STPI++S+ + +S + S GS+ K Sbjct: 141 STSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAK 200 Query: 439 TTPVHNNNVAVG 404 T +N+ G Sbjct: 201 TVSASSNSTISG 212 >SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 599 Score = 27.9 bits (59), Expect = 1.3 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Frame = -1 Query: 619 SATSLSSSXTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 440 S TS+SSS ++N + +VDS P + V D K KE S+ G S T+ Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKSKFPPPSQTLVT 425 Query: 439 TTPVH--NNNVAVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVVRVPDR 287 T+ + N + G + +D S SV + + +++ S+ + +R Sbjct: 426 TSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVSHEIQNR 478 >SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces pombe|chr 1|||Manual Length = 1085 Score = 26.6 bits (56), Expect = 3.1 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 343 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 236 A+ + E +++VVRV R D + +N + + TSG Sbjct: 64 ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 26.6 bits (56), Expect = 3.1 Identities = 16/62 (25%), Positives = 28/62 (45%) Frame = +3 Query: 408 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 587 +AT WT + T+ + + SS A+ WS SS + + +T +++ T Sbjct: 922 SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981 Query: 588 SV 593 SV Sbjct: 982 SV 983 >SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 26.2 bits (55), Expect = 4.1 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +3 Query: 438 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 557 VLPT T S VS SSL++F ST G +T Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283 >SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 26.2 bits (55), Expect = 4.1 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -3 Query: 131 SKRIGLHLPHSDCCLQGSW 75 S + LPHSD L GSW Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308 >SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr 3|||Manual Length = 527 Score = 26.2 bits (55), Expect = 4.1 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +2 Query: 227 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 400 W+FT ++N QV NG + S +N + PL +G S+G+ + + LL Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481 Query: 401 VSDC 412 + C Sbjct: 482 RTQC 485 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 25.8 bits (54), Expect = 5.4 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 Query: 95 SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 205 S Y +G+S V + G+GV H+V + E + L+ R Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177 >SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 507 Score = 25.4 bits (53), Expect = 7.2 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -1 Query: 625 VGSATSLSSSXTDNVRAQAEANQVDSTPIAASVVDEPD-QKVAKELSDTGNSIDGSV 458 + S SLSS+ TDN+ A V T +AASV D + +S +S SV Sbjct: 166 LSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTDSASATISSVVDSATSSV 217 >SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual Length = 978 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 284 NSIRNSNYNGNLPLFVIVHGWNSNGN 361 +SIRNS++N L LF V S+GN Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629 >SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosaccharomyces pombe|chr 2|||Manual Length = 658 Score = 25.0 bits (52), Expect = 9.5 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +1 Query: 193 PYVKERCKQPIL---AFHQT*PKQPSSYYKWQCQLYPELELQWKPASLCYCPRLEQQ 354 P+ +E ++P+L A + QP+S +LYP PAS P L Q Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQ 273 >SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr 3|||Manual Length = 542 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +2 Query: 155 HLVDLEEPAEEDILMSRNGANN 220 +LVD++EPAEE I + ++ N+ Sbjct: 52 NLVDVQEPAEETIPLEQDKEND 73 >SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 2386 Score = 25.0 bits (52), Expect = 9.5 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +1 Query: 247 PKQPSSYYKWQCQLYPELELQWKPASLCYCPRL 345 PK P +Y+W + +PE W + YC L Sbjct: 2185 PKFPPVFYEWFVESFPEPN-NWVTSRQNYCRTL 2216 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,801,288 Number of Sequences: 5004 Number of extensions: 59568 Number of successful extensions: 221 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 221 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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