Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b05f
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.25
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 28 1.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 4.1
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 4.1
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 5.4
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 7.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.2
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 9.5
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 9.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.5
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = -1
Query: 619 SATSLSSSXTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 440
S +S +++ + + + ++ STPI++S+ + +S + S GS+ K
Sbjct: 141 STSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAK 200
Query: 439 TTPVHNNNVAVG 404
T +N+ G
Sbjct: 201 TVSASSNSTISG 212
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 1.3
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 619 SATSLSSSXTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 440
S TS+SSS ++N + +VDS P + V D K KE S+ G S T+
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKSKFPPPSQTLVT 425
Query: 439 TTPVH--NNNVAVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVVRVPDR 287
T+ + N + G + +D S SV + + +++ S+ + +R
Sbjct: 426 TSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVSHEIQNR 478
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 343 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 236
A+ + E +++VVRV R D + +N + + TSG
Sbjct: 64 ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 408 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 587
+AT WT + T+ + + SS A+ WS SS + + +T +++ T
Sbjct: 922 SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981
Query: 588 SV 593
SV
Sbjct: 982 SV 983
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 438 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 557
VLPT T S VS SSL++F ST G +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 131 SKRIGLHLPHSDCCLQGSW 75
S + LPHSD L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 227 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 400
W+FT ++N QV NG + S +N + PL +G S+G+ + + LL
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481
Query: 401 VSDC 412
+ C
Sbjct: 482 RTQC 485
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 95 SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 205
S Y +G+S V + G+GV H+V + E + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 625 VGSATSLSSSXTDNVRAQAEANQVDSTPIAASVVDEPD-QKVAKELSDTGNSIDGSV 458
+ S SLSS+ TDN+ A V T +AASV D + +S +S SV
Sbjct: 166 LSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTDSASATISSVVDSATSSV 217
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 284 NSIRNSNYNGNLPLFVIVHGWNSNGN 361
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +1
Query: 193 PYVKERCKQPIL---AFHQT*PKQPSSYYKWQCQLYPELELQWKPASLCYCPRLEQQ 354
P+ +E ++P+L A + QP+S +LYP PAS P L Q
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQ 273
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 155 HLVDLEEPAEEDILMSRNGANN 220
+LVD++EPAEE I + ++ N+
Sbjct: 52 NLVDVQEPAEETIPLEQDKEND 73
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 247 PKQPSSYYKWQCQLYPELELQWKPASLCYCPRL 345
PK P +Y+W + +PE W + YC L
Sbjct: 2185 PKFPPVFYEWFVESFPEPN-NWVTSRQNYCRTL 2216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,288
Number of Sequences: 5004
Number of extensions: 59568
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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