Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b05f
(652 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 29 0.039
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 28 0.090
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 0.48
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 24 1.1
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 24 1.5
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 24 1.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 1.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 1.9
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 2.6
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 23 3.4
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 5.9
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 22 5.9
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 21 7.8
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 7.8
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 7.8
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 7.8
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 7.8
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 7.8
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 29.1 bits (62), Expect = 0.039
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +2
Query: 173 EPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHGWNS 352
+P +E+ + GA L T + +N+ IT GN N+ ++N N N +G N
Sbjct: 200 QPEDEECTEATAGA---VVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGAND 256
Query: 353 NGN 361
NGN
Sbjct: 257 NGN 259
Score = 27.9 bits (59), Expect = 0.090
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 200 SRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNL 319
S N NN N NN+ NGN N N+N NG++
Sbjct: 238 SNNNNNNN-----NNNNNNNGANDNGNGNGASNNNNNGDM 272
Score = 24.2 bits (50), Expect = 1.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 236 TRRNQNNHQVITNGNVNSIRNSNYNGN 316
T + NN+ N N N+ N N NGN
Sbjct: 235 TNASNNNNNNNNNNNNNNGANDNGNGN 261
Score = 21.8 bits (44), Expect = 5.9
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 206 NGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLF 328
N +NN N NN+ N N N SN N N +F
Sbjct: 236 NASNNNN---NNNNNNNNNNGANDNGNGNGASNNNNNGDMF 273
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 27.9 bits (59), Expect = 0.090
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 489 PTLGTPLTAVLYRPLARPRQST 424
P +GTP T ++Y+P P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 25.4 bits (53), Expect = 0.48
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 236 TRRNQNNHQVITNGNVNSIRNSNYNGN 316
T N NN++ N N N+ N+NYN N
Sbjct: 322 TIHNNNNYKY--NYNNNNYNNNNYNNN 346
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 236 TRRNQNNHQVIT-NGNVNSIRNSNYNGNLPLF 328
T N NN+ N N N+ N+NYN L+
Sbjct: 322 TIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLY 353
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.8 bits (49), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 251 NNHQVITNGNVNSIRNSNYNGN 316
NN++ N N+ N+NYN N
Sbjct: 87 NNYKYSNYNNYNNNYNNNYNNN 108
Score = 23.0 bits (47), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 245 NQNNHQVITNGNVNSIRNSNYNGN 316
N NN+ N N N+ N+NYN N
Sbjct: 93 NYNNY----NNNYNNNYNNNYNNN 112
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.8 bits (49), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 251 NNHQVITNGNVNSIRNSNYNGN 316
NN++ N N+ N+NYN N
Sbjct: 87 NNYKYSNYNNYNNNYNNNYNNN 108
Score = 23.0 bits (47), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 245 NQNNHQVITNGNVNSIRNSNYNGN 316
N NN+ N N N+ N+NYN N
Sbjct: 93 NYNNY----NNNYNNNYNNNYNNN 112
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 1.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 439 TTPVHNNNVAVGDGQQGGAD 380
+ P +N + GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 1.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 439 TTPVHNNNVAVGDGQQGGAD 380
+ P +N + GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 251 NNHQVITNGNVNSIRNSNYN 310
NN++ N N+ N+NYN
Sbjct: 320 NNYKYSNYNNYNNYNNNNYN 339
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 22.6 bits (46), Expect = 3.4
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 245 NQN-NHQVITNGNVNSIRNSNYNGN 316
NQN N+Q N N+ +N+N N N
Sbjct: 428 NQNDNNQKNNKKNANNQKNNNQNDN 452
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 5.9
Identities = 10/41 (24%), Positives = 17/41 (41%)
Frame = +3
Query: 120 DTFGCLMARVFLTSLTWKNRPRKTSLCQGTVQTTNTGFSPD 242
D C++ + + K+ P + C V TT +PD
Sbjct: 1440 DETSCMLDKTRAQTFDGKDYPLRLGPCWHAVMTTYPRINPD 1480
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.8 bits (44), Expect = 5.9
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1
Query: 37 GWLNSIVFWQCYP 75
GW + +F+Q YP
Sbjct: 23 GWWKNAIFYQVYP 35
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 21.4 bits (43), Expect = 7.8
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = -1
Query: 619 SATSLSSSXTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGS 461
+A+S +S + + +E+++VD ++ D D + SD+G ++ S
Sbjct: 187 TASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTDDHSSVQSSSDSGVTMSTS 239
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 278 NVNSIRNSNYNGN 316
N N+ N+NYN N
Sbjct: 93 NYNNYNNNNYNNN 105
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 278 NVNSIRNSNYNGN 316
N N+ N+NYN N
Sbjct: 93 NYNNYNNNNYNNN 105
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 278 NVNSIRNSNYNGN 316
N N+ N+NYN N
Sbjct: 93 NYNNYNNNNYNNN 105
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 278 NVNSIRNSNYNGN 316
N N+ N+NYN N
Sbjct: 93 NYNNYNNNNYNNN 105
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 7.8
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +2
Query: 236 TRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNS 364
T R ++ I + N+ + SNYN + + +N+N N+
Sbjct: 304 TERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNN 346
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,018
Number of Sequences: 438
Number of extensions: 5184
Number of successful extensions: 45
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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