BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b05f (652 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g37925.1 68415.m04655 copper transporter family protein simil... 31 0.88 At1g54970.1 68414.m06278 proline-rich family protein similar to ... 29 2.0 At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 29 2.7 At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 29 2.7 At3g20460.1 68416.m02590 sugar transporter, putative similar to ... 29 2.7 At4g16260.1 68417.m02466 glycosyl hydrolase family 17 protein si... 28 4.7 At3g18810.1 68416.m02389 protein kinase family protein contains ... 28 4.7 At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 28 6.2 At1g26390.1 68414.m03219 FAD-binding domain-containing protein s... 28 6.2 At1g07440.1 68414.m00794 tropinone reductase, putative / tropine... 28 6.2 At4g21585.1 68417.m03124 bifunctional nuclease, putative similar... 27 8.2 At3g55160.1 68416.m06126 expressed protein 27 8.2 At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 27 8.2 At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containi... 27 8.2 >At2g37925.1 68415.m04655 copper transporter family protein similar to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis thaliana}; contains Pfam profile PF04145: Ctr copper transporter family; supporting cDNA gi|18496855|gb|AF466372.1| Length = 145 Score = 30.7 bits (66), Expect = 0.88 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = +2 Query: 329 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAV 469 V+V WN+ + T RP+LL + +C V+ W G G+Y A+ Sbjct: 8 VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALAL 59 >At1g54970.1 68414.m06278 proline-rich family protein similar to proline-rich protein GI:170048 from [Glycine max] Length = 335 Score = 29.5 bits (63), Expect = 2.0 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -2 Query: 570 LKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPL-TAVLYRPLARPRQSTTITL 412 L P +T+P LPPP N PTL P+ T +Y+P P T TL Sbjct: 70 LSPPVYTKPTLPPPAYTPPV----YNKPTLPAPVYTPPVYKPTLSPPVYTKPTL 119 >At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain Length = 1613 Score = 29.1 bits (62), Expect = 2.7 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -1 Query: 586 NVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 473 N+ A A+++ +P+A+ V +P V E S GN+ Sbjct: 776 NLLASVAADEMSKSPVASPSVSQPPNSVMNENSTVGNN 813 >At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain Length = 1613 Score = 29.1 bits (62), Expect = 2.7 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -1 Query: 586 NVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 473 N+ A A+++ +P+A+ V +P V E S GN+ Sbjct: 776 NLLASVAADEMSKSPVASPSVSQPPNSVMNENSTVGNN 813 >At3g20460.1 68416.m02590 sugar transporter, putative similar to ERD6 protein [Arabidopsis thaliana] GI:3123712, sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI:14585699, GI:14585701; contains Pfam profile PF00083: major facilitator superfamily protein Length = 488 Score = 29.1 bits (62), Expect = 2.7 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +2 Query: 362 SAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV-----WLIN 526 SA+N+++ A +AV+ V+ W+ LA ++ VP V +F+G F + WL Sbjct: 181 SAINSLVMCASVAVTYLLGSVISWQKLA------LISTVPCVFEFVGLFFIPESPRWLSR 234 Query: 527 NG 532 NG Sbjct: 235 NG 236 >At4g16260.1 68417.m02466 glycosyl hydrolase family 17 protein similar to glucan endo-1,3-beta-glucosidase, basic vacuolar isoform precursor SP:P52407 from [Hevea brasiliensis] Length = 306 Score = 28.3 bits (60), Expect = 4.7 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +2 Query: 227 WLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVN 373 W +R QN + + +++ S G+LP+ V GW SNG +A + Sbjct: 222 WDGSRGYQNLFDALLDVVYSAVERSG-GGSLPVVVSESGWPSNGGNAAS 269 >At3g18810.1 68416.m02389 protein kinase family protein contains Pfam PF00069: Protein kinase domain Length = 700 Score = 28.3 bits (60), Expect = 4.7 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = +2 Query: 200 SRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVN 373 + NG NN N NN NGN N+ N+N N N +G N+NGN+ N Sbjct: 87 NNNGNNNN----DNNNGNNKDNNNNGNNNNGNNNNGNDN-------NGNNNNGNNNDN 133 >At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain Length = 1611 Score = 27.9 bits (59), Expect = 6.2 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = -1 Query: 586 NVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 473 N+ A A+++ +P+A+ V +P + E S GN+ Sbjct: 776 NLLASVAADEMSKSPVASPSVSQPPNSLMNENSTVGNN 813 >At1g26390.1 68414.m03219 FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain Length = 530 Score = 27.9 bits (59), Expect = 6.2 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 13 QHEAPTSAGWLNSIVFWQCYP 75 +HE WLNS +FW YP Sbjct: 330 KHEDCQEMSWLNSTLFWADYP 350 >At1g07440.1 68414.m00794 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase SP:P50165 from [Datura stramonium] Length = 266 Score = 27.9 bits (59), Expect = 6.2 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -1 Query: 592 TDNVRAQAEANQVDSTPIAASVVDEPDQKV 503 +D +RA A A V +TP+A +V D+ +KV Sbjct: 184 SDGIRANAVAPAVIATPLAEAVYDDEFKKV 213 >At4g21585.1 68417.m03124 bifunctional nuclease, putative similar to bifunctional nuclease [Zinnia elegans] gi|4099833|gb|AAD00694 Length = 299 Score = 27.5 bits (58), Expect = 8.2 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = +2 Query: 164 DLEEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFV 331 D+ +P L G N + RR N H V N + S + YN +LPL + Sbjct: 151 DIHQPLHVGFL-GDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPLMI 205 >At3g55160.1 68416.m06126 expressed protein Length = 2149 Score = 27.5 bits (58), Expect = 8.2 Identities = 8/19 (42%), Positives = 14/19 (73%) Frame = +1 Query: 40 WLNSIVFWQCYPHDPWRQQ 96 WL+S ++ CYP P+R++ Sbjct: 762 WLSSFLYLSCYPSAPYRRK 780 >At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'auxin-independent growth promoter -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497. Length = 579 Score = 27.5 bits (58), Expect = 8.2 Identities = 18/65 (27%), Positives = 27/65 (41%) Frame = -2 Query: 525 LMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEFPLLF 346 + S +KL CP +T +L R L PR + E + T+EFP L+ Sbjct: 397 MTSNERKLAGLCPLNAKEVTRLL-RALGAPRDARIYWAGGEPLGGKEALKPLTSEFPHLY 455 Query: 345 QPWTI 331 + I Sbjct: 456 NKYDI 460 >At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 738 Score = 27.5 bits (58), Expect = 8.2 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = -1 Query: 286 VDIAICNNLMVVLV---TSGEKPVLVVCTVP*HKDVFLGRFFQVNEVRNTLAIRHPNVSA 116 VD+ + + VL + G P +V+C + H LGRF + +V +L R Sbjct: 423 VDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQ 482 Query: 115 YTF 107 YTF Sbjct: 483 YTF 485 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,314,912 Number of Sequences: 28952 Number of extensions: 343151 Number of successful extensions: 1355 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1272 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1347 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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