Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b05f
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37925.1 68415.m04655 copper transporter family protein simil...    31   0.88 
At1g54970.1 68414.m06278 proline-rich family protein similar to ...    29   2.0  
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co...    29   2.7  
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co...    29   2.7  
At3g20460.1 68416.m02590 sugar transporter, putative similar to ...    29   2.7  
At4g16260.1 68417.m02466 glycosyl hydrolase family 17 protein si...    28   4.7  
At3g18810.1 68416.m02389 protein kinase family protein contains ...    28   4.7  
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co...    28   6.2  
At1g26390.1 68414.m03219 FAD-binding domain-containing protein s...    28   6.2  
At1g07440.1 68414.m00794 tropinone reductase, putative / tropine...    28   6.2  
At4g21585.1 68417.m03124 bifunctional nuclease, putative similar...    27   8.2  
At3g55160.1 68416.m06126 expressed protein                             27   8.2  
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138...    27   8.2  
At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containi...    27   8.2  

>At2g37925.1 68415.m04655 copper transporter family protein similar
           to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
           thaliana}; contains Pfam profile PF04145: Ctr copper
           transporter family; supporting cDNA
           gi|18496855|gb|AF466372.1|
          Length = 145

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 329 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAV 469
           V+V  WN+   +   T  RP+LL  +     +C V+   W G   G+Y  A+
Sbjct: 8   VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALAL 59


>At1g54970.1 68414.m06278 proline-rich family protein similar to
           proline-rich protein GI:170048 from [Glycine max]
          Length = 335

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 570 LKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPL-TAVLYRPLARPRQSTTITL 412
           L P  +T+P LPPP           N PTL  P+ T  +Y+P   P   T  TL
Sbjct: 70  LSPPVYTKPTLPPPAYTPPV----YNKPTLPAPVYTPPVYKPTLSPPVYTKPTL 119


>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1613

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 586 NVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 473
           N+ A   A+++  +P+A+  V +P   V  E S  GN+
Sbjct: 776 NLLASVAADEMSKSPVASPSVSQPPNSVMNENSTVGNN 813


>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1613

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 586 NVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 473
           N+ A   A+++  +P+A+  V +P   V  E S  GN+
Sbjct: 776 NLLASVAADEMSKSPVASPSVSQPPNSVMNENSTVGNN 813


>At3g20460.1 68416.m02590 sugar transporter, putative similar to
           ERD6 protein [Arabidopsis thaliana] GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 488

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +2

Query: 362 SAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV-----WLIN 526
           SA+N+++  A +AV+     V+ W+ LA       ++ VP V +F+G F +     WL  
Sbjct: 181 SAINSLVMCASVAVTYLLGSVISWQKLA------LISTVPCVFEFVGLFFIPESPRWLSR 234

Query: 527 NG 532
           NG
Sbjct: 235 NG 236


>At4g16260.1 68417.m02466 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase, basic
           vacuolar isoform precursor SP:P52407 from [Hevea
           brasiliensis]
          Length = 306

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 227 WLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVN 373
           W  +R  QN    + +   +++  S   G+LP+ V   GW SNG +A +
Sbjct: 222 WDGSRGYQNLFDALLDVVYSAVERSG-GGSLPVVVSESGWPSNGGNAAS 269


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +2

Query: 200 SRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVN 373
           + NG NN        N NN     NGN N+  N+N N N       +G N+NGN+  N
Sbjct: 87  NNNGNNNN----DNNNGNNKDNNNNGNNNNGNNNNGNDN-------NGNNNNGNNNDN 133


>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1611

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 586 NVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 473
           N+ A   A+++  +P+A+  V +P   +  E S  GN+
Sbjct: 776 NLLASVAADEMSKSPVASPSVSQPPNSLMNENSTVGNN 813


>At1g26390.1 68414.m03219 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 530

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 13  QHEAPTSAGWLNSIVFWQCYP 75
           +HE      WLNS +FW  YP
Sbjct: 330 KHEDCQEMSWLNSTLFWADYP 350


>At1g07440.1 68414.m00794 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 266

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 592 TDNVRAQAEANQVDSTPIAASVVDEPDQKV 503
           +D +RA A A  V +TP+A +V D+  +KV
Sbjct: 184 SDGIRANAVAPAVIATPLAEAVYDDEFKKV 213


>At4g21585.1 68417.m03124 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 299

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 164 DLEEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFV 331
           D+ +P     L    G N     + RR  N H V  N  + S   + YN +LPL +
Sbjct: 151 DIHQPLHVGFL-GDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPLMI 205


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 40  WLNSIVFWQCYPHDPWRQQ 96
           WL+S ++  CYP  P+R++
Sbjct: 762 WLSSFLYLSCYPSAPYRRK 780


>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -2

Query: 525 LMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEFPLLF 346
           + S  +KL   CP     +T +L R L  PR +       E       +   T+EFP L+
Sbjct: 397 MTSNERKLAGLCPLNAKEVTRLL-RALGAPRDARIYWAGGEPLGGKEALKPLTSEFPHLY 455

Query: 345 QPWTI 331
             + I
Sbjct: 456 NKYDI 460


>At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 738

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -1

Query: 286 VDIAICNNLMVVLV---TSGEKPVLVVCTVP*HKDVFLGRFFQVNEVRNTLAIRHPNVSA 116
           VD+ + +    VL    + G  P +V+C +  H    LGRF +  +V  +L  R      
Sbjct: 423 VDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQ 482

Query: 115 YTF 107
           YTF
Sbjct: 483 YTF 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,912
Number of Sequences: 28952
Number of extensions: 343151
Number of successful extensions: 1355
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)