Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b04r
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    27   2.9  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    26   5.1  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 125 LFCNLKHIFYQILYNSI*IKVHVSRKS 45
           LF N+KH+F+Q     + + +HV  K+
Sbjct: 703 LFSNMKHLFFQPCEGELIVLIHVHLKA 729


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 35  RFEYFFLKHEPLSKSNYTKSDKICVLD 115
           R++Y F K   LS    T+ DK+C+LD
Sbjct: 161 RYQYMFTK---LSVFEQTQFDKVCILD 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,026
Number of Sequences: 5004
Number of extensions: 50391
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)