Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b04f
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.39 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.4  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 440 CTRCSSGNNAQHFGSYSCSKECKRMANNLLSKE 342
           C+ C    + +H+G YSC + CK      + K+
Sbjct: 86  CSICGDRASGKHYGVYSC-EGCKGFFKRTVRKD 117


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 416 NAQHFGSYSCSKECKRMANNLL 351
           N +HF S  CS + + + N++L
Sbjct: 344 NMEHFFSVKCSIQSESLLNDIL 365


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 497 KHSSHFYY-FVESINCCSFRCT 435
           K  ++F Y FV  + C +F CT
Sbjct: 49  KTRTYFIYAFVAPVKCLAFFCT 70


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 497 KHSSHFYY-FVESINCCSFRCT 435
           K  ++F Y FV  + C +F CT
Sbjct: 282 KTRTYFIYAFVAPVKCLAFFCT 303


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 497 KHSSHFYY-FVESINCCSFRCT 435
           K  ++F Y FV  + C +F CT
Sbjct: 282 KTRTYFIYAFVAPVKCLAFFCT 303


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 125 PPHQNPPPYVTQPQPG 172
           PPHQ  PP   QP  G
Sbjct: 203 PPHQQ-PPIQQQPNQG 217


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 125 PPHQNPPPYVTQPQPG 172
           PPHQ  PP   QP  G
Sbjct: 205 PPHQQ-PPIQQQPNQG 219


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,503
Number of Sequences: 336
Number of extensions: 3685
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)