BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b04f (627 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 27 2.9 SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 5.1 SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 9.0 SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 9.0 >SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 167 Score = 26.6 bits (56), Expect = 2.9 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 83 NVEYKADLSGTHFVPPHQNPPPYVTQPQ 166 NV + +S + +PP +PPP +T Q Sbjct: 25 NVPVRRSISSSSSIPPSSSPPPRLTITQ 52 >SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosaccharomyces pombe|chr 2|||Manual Length = 933 Score = 25.8 bits (54), Expect = 5.1 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Frame = +2 Query: 260 YTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCT-NSCQN--AEH-YCPN 427 + C +CN + E S LC+ C C P C N+ N A H C N Sbjct: 49 FKCVNCNKKLDPSSEDFSQDDQKQIFCKLCVDICNGC-STPICEFNAVSNSQANHPCCSN 107 Query: 428 CSAYIGN 448 C A+I + Sbjct: 108 CRAFINS 114 >SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 25.0 bits (52), Expect = 9.0 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +2 Query: 242 GPDPSHYTCPSCNTAIVTRVERVSTTKTHLFAALL 346 G P + PSC R E + +THL AL+ Sbjct: 28 GEKPFECSYPSCKKRFTRRDELIRHVRTHLRKALV 62 >SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces pombe|chr 1|||Manual Length = 756 Score = 25.0 bits (52), Expect = 9.0 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 575 STLKWYCRHALSFYI 619 S ++WYCRH L ++ Sbjct: 235 SVIRWYCRHQLEDFM 249 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,661,636 Number of Sequences: 5004 Number of extensions: 54714 Number of successful extensions: 141 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 141 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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