Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b04f
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    27   2.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   5.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   9.0  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   9.0  

>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 83  NVEYKADLSGTHFVPPHQNPPPYVTQPQ 166
           NV  +  +S +  +PP  +PPP +T  Q
Sbjct: 25  NVPVRRSISSSSSIPPSSSPPPRLTITQ 52


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
 Frame = +2

Query: 260 YTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCT-NSCQN--AEH-YCPN 427
           + C +CN  +    E  S          LC+  C  C   P C  N+  N  A H  C N
Sbjct: 49  FKCVNCNKKLDPSSEDFSQDDQKQIFCKLCVDICNGC-STPICEFNAVSNSQANHPCCSN 107

Query: 428 CSAYIGN 448
           C A+I +
Sbjct: 108 CRAFINS 114


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 242 GPDPSHYTCPSCNTAIVTRVERVSTTKTHLFAALL 346
           G  P   + PSC      R E +   +THL  AL+
Sbjct: 28  GEKPFECSYPSCKKRFTRRDELIRHVRTHLRKALV 62


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 575 STLKWYCRHALSFYI 619
           S ++WYCRH L  ++
Sbjct: 235 SVIRWYCRHQLEDFM 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,636
Number of Sequences: 5004
Number of extensions: 54714
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)