BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b04f (627 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_02_0958 + 24814588-24814704,24814957-24815380,24815458-248156... 30 1.3 08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467... 29 3.0 08_02_0583 + 19006495-19006683,19006954-19007060,19007124-190072... 29 4.0 04_04_0581 + 26365806-26366234 29 4.0 02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928... 29 4.0 09_04_0048 - 14188102-14188146,14188656-14188790 28 5.3 05_01_0142 - 940421-940701,941262-941574 28 5.3 12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069... 28 7.0 10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604... 28 7.0 11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 27 9.2 09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 27 9.2 03_05_0051 - 20288456-20291728 27 9.2 >12_02_0958 + 24814588-24814704,24814957-24815380,24815458-24815669, 24815853-24816120,24816226-24816416,24816635-24816895 Length = 490 Score = 30.3 bits (65), Expect = 1.3 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = -2 Query: 605 EHGDNTILVWILSSKS*YMVWIYDPT 528 E GD ILV+I S S + VWIYDP+ Sbjct: 94 EKGD--ILVFIYSGNSHFKVWIYDPS 117 >08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599, 4670797-4670859,4671483-4671533,4671627-4671691, 4671797-4671935,4672332-4672388,4672729-4672827, 4673266-4673337,4673426-4673494,4673617-4673762, 4673881-4674157 Length = 438 Score = 29.1 bits (62), Expect = 3.0 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +2 Query: 254 SHYTCPSCNTAIVTRVER 307 SHY CPSC TAI R R Sbjct: 15 SHYPCPSCPTAIPIRDRR 32 >08_02_0583 + 19006495-19006683,19006954-19007060,19007124-19007289, 19007362-19007458,19008011-19008366 Length = 304 Score = 28.7 bits (61), Expect = 4.0 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +3 Query: 123 YRRIRTRHRTSPNHNQEYILHILPYLLN 206 YR TR + +++ +Y+L++LP L N Sbjct: 88 YRLSNTREQIQSSYSSDYLLYVLPLLFN 115 >04_04_0581 + 26365806-26366234 Length = 142 Score = 28.7 bits (61), Expect = 4.0 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 452 CSFRCTRCSSGNNAQHFGSYSCSKECKR 369 C RC R SS ++ H S C +CK+ Sbjct: 110 CGKRCYRSSSSSSLSHIPSTKCVVKCKK 137 >02_03_0408 - 18692176-18692278,18692590-18692669,18692764-18692890, 18694016-18694051,18695832-18696085 Length = 199 Score = 28.7 bits (61), Expect = 4.0 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 9/76 (11%) Frame = +2 Query: 251 PSHYTCPSCNTAIVTRVERVST--------TKTHLFAALLCLIGCWPCVCIPYCTNSCQ- 403 P+ + C +C A V+ + T +K L + + C++ VC + C Sbjct: 68 PAPFHCQACGAAAVSSLRSEDTIFFPVHGRSKPSLASVVACMMPFMMGVCFLCPSMDCLW 127 Query: 404 NAEHYCPNCSAYIGNY 451 + HYCP+C + + Sbjct: 128 HKYHYCPSCGEKVAEF 143 >09_04_0048 - 14188102-14188146,14188656-14188790 Length = 59 Score = 28.3 bits (60), Expect = 5.3 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = +2 Query: 254 SHYTCPSCNTAIVTR 298 SHY CPSC TAI R Sbjct: 15 SHYPCPSCPTAIPKR 29 >05_01_0142 - 940421-940701,941262-941574 Length = 197 Score = 28.3 bits (60), Expect = 5.3 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 104 LSGTHFVPPHQNPPPYVTQPQPG 172 ++G H PPHQ PP P PG Sbjct: 23 VAGGHGYPPHQGYPPQGYPPPPG 45 >12_02_0142 - 14306325-14306490,14306584-14306687,14306788-14306967, 14307155-14307253,14307346-14307535,14307722-14307748, 14308190-14308506,14308532-14308675,14308799-14308905, 14309085-14309357,14309470-14309827 Length = 654 Score = 27.9 bits (59), Expect = 7.0 Identities = 13/53 (24%), Positives = 24/53 (45%) Frame = -3 Query: 187 ICRIYSWLWLGDVRWRVLMRRYEVCARQICFIFNIGHFSLVRHKSRTKFPVIR 29 IC ++ V+W + + + + F FNI +F H + FP++R Sbjct: 476 ICNSEKFVSESCVKWVKSINKEQKLPKLDLFSFNISYFFFASHPIKLFFPIVR 528 >10_07_0194 - 13957709-13957925,13960065-13960129,13960281-13960454, 13960847-13960889,13961081-13961225,13961305-13961413, 13961694-13961822,13961935-13962031,13962639-13962703, 13963275-13963439 Length = 402 Score = 27.9 bits (59), Expect = 7.0 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 3 DSRLWCSYNRITGNLVRDLCLT 68 +S+ WC R G++V DLC T Sbjct: 335 ESQAWCGLTRSNGDVVADLCGT 356 >11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549, 3730833-3730927,3731273-3731334,3731416-3731507, 3731587-3731722,3731818-3731904,3732430-3732519, 3732969-3733071,3733616-3733716,3733837-3733971, 3734006-3734093,3734484-3734544,3734626-3734689, 3735219-3735347 Length = 541 Score = 27.5 bits (58), Expect = 9.2 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = -2 Query: 458 NCCSFRCTRCSSGNNAQHFGSYSCSKECKRMANNLLSKEEQQTDVSLSWKHV 303 N F C +C G + G+Y CS+ +N + +Q+T +S +H+ Sbjct: 340 NHADFLCPQCGLGCDRAFCGAYWCSQGVNSSQHNPIC--DQETFKMISQRHI 389 >09_04_0689 - 19480409-19480599,19480780-19480889,19481032-19481117, 19481410-19481523,19481697-19482066,19482216-19482346, 19482628-19482736,19482901-19483022,19483113-19483219, 19483447-19483551,19483654-19483812,19484071-19484126, 19484200-19484251,19486724-19486821,19487086-19487210 Length = 644 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = +2 Query: 92 YKADLSGTHF--VPPHQNPPPYVTQPQPGI 175 Y+ D GT + +P +Q PP Y+TQ G+ Sbjct: 50 YQLDTQGTRYQPIPVYQVPPRYLTQGIDGV 79 >03_05_0051 - 20288456-20291728 Length = 1090 Score = 27.5 bits (58), Expect = 9.2 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -1 Query: 120 KCVPDKSALYSTLAILV*LDTNHELNSQL 34 +C+ DK +S + ++V DTNH +NSQL Sbjct: 351 ECLSDKDC-WSLIKMIVFDDTNHLINSQL 378 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,198,827 Number of Sequences: 37544 Number of extensions: 362836 Number of successful extensions: 1171 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1167 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1525730988 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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