BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b04f (627 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23925| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.082 SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 31 0.77 SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1) 30 1.3 SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 29 3.1 SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_19168| Best HMM Match : rve (HMM E-Value=3.9e-38) 29 4.1 SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_55551| Best HMM Match : CBM_5_12 (HMM E-Value=8.7) 28 5.4 SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1 SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1 SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 7.1 SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 28 7.1 SB_30597| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_53217| Best HMM Match : RVT_1 (HMM E-Value=3.1e-13) 27 9.4 >SB_23925| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 217 Score = 34.3 bits (75), Expect = 0.082 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -3 Query: 148 RWRVLMRRYEVCARQICFIFNIGHFSLVRHKSRTKFPVIRLYEHHNR 8 RWR L R YE C R ++ I F L R K T+ I H ++ Sbjct: 57 RWRTLERPYEPCRRDEDRLYRIEKFRLTRFKDHTRKAAIFKISHKHK 103 >SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) Length = 530 Score = 31.1 bits (67), Expect = 0.77 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +2 Query: 341 LLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYIGNYS 454 L C +GC P +C P CT +C + PN A + S Sbjct: 441 LTCPVGC-PSMCAPSCTPACCAEQQCWPNQPALLAQQS 477 >SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1) Length = 166 Score = 30.3 bits (65), Expect = 1.3 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 251 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCL 352 P + TCP C IVTR S T+ +A LC+ Sbjct: 42 PVYTTCPFCQEKIVTRTSFKSGKYTYWTSACLCI 75 >SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) Length = 474 Score = 29.1 bits (62), Expect = 3.1 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Frame = +2 Query: 266 CPSCNTAIV--TRVERVSTTKTHLFAALLCL---IGCWPCVC-IPYCTNSCQNAEHYCPN 427 CP CN ++ ++ T + +C+ + C C YC +C + +YCP Sbjct: 380 CPLCNESVNGNQKIYFAMDTSYNDLTCQICMDAEVNTAFCPCGHVYCCQTCASNLYYCPL 439 Query: 428 CSAYI 442 C +I Sbjct: 440 CKTFI 444 >SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2671 Score = 29.1 bits (62), Expect = 3.1 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = -2 Query: 464 SINCCSFRCTRCSSGNNAQHFGSYSCSKECKRMANN 357 SIN C + C +C G + S SC K K +N Sbjct: 511 SINRCCWECFQCPEGTISSKESSTSCKKCSKEQMSN 546 >SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 5222 Score = 28.7 bits (61), Expect = 4.1 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = +2 Query: 365 PCVCIPYCTNSCQNA-EHYCP-NCSAYIGNY 451 PCV YCTN A EH CP +IG+Y Sbjct: 859 PCVKGHYCTNGTTTATEHPCPAGGKCWIGHY 889 >SB_19168| Best HMM Match : rve (HMM E-Value=3.9e-38) Length = 586 Score = 28.7 bits (61), Expect = 4.1 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = -2 Query: 470 VESINCCSFRCTRCSSGNNAQHFGSYSCSKECKRMANNLLSK 345 VE + + C R ++ N+ F S ++ C+R AN L+ + Sbjct: 324 VELMKAMKYCCDRLAARTNSLQFLSLKLTRFCRRQANGLVER 365 >SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 987 Score = 28.3 bits (60), Expect = 5.4 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = -2 Query: 452 CSFRCTRCSSGNNAQHFGSYSC 387 C + C RC G + GSY+C Sbjct: 497 CCWNCQRCEKGTVSSEAGSYAC 518 >SB_55551| Best HMM Match : CBM_5_12 (HMM E-Value=8.7) Length = 463 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -2 Query: 479 YYFVESINC-CSFRCTRCSSGNNAQHFGSYSCSKEC 375 YY ES N C S NA+H+ Y+ +KEC Sbjct: 158 YYKKESFNMKTKGECIEKYSNGNAKHWSKYNDAKEC 193 >SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3474 Score = 27.9 bits (59), Expect = 7.1 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = +2 Query: 392 NSCQNAEHYCP-NCSAYIGNYSS*CS 466 + C +H C NC+ IGNYS C+ Sbjct: 669 DECATGKHQCAQNCTNIIGNYSCSCT 694 >SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1300 Score = 27.9 bits (59), Expect = 7.1 Identities = 18/72 (25%), Positives = 27/72 (37%) Frame = +2 Query: 251 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNC 430 P H +C C A R + + +++ CL C P C+ ++YC C Sbjct: 768 PCHESCAECTGAGHDRCTKCNHGLVKVWSQ--CLASCPPSYFFNPRDMQCEPCDYYCSTC 825 Query: 431 SAYIGNYSS*CS 466 GN CS Sbjct: 826 EG--GNGLRNCS 835 >SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) Length = 785 Score = 27.9 bits (59), Expect = 7.1 Identities = 11/32 (34%), Positives = 16/32 (50%) Frame = -2 Query: 479 YYFVESINCCSFRCTRCSSGNNAQHFGSYSCS 384 Y+ NCC + CT C G + + + SCS Sbjct: 534 YWQTRMKNCC-WECTECPQGTISPRYAAPSCS 564 >SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) Length = 1103 Score = 27.9 bits (59), Expect = 7.1 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +2 Query: 308 VSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYI 442 +S+ + +L C+ C P VC P C++ C Y PN ++ Sbjct: 691 LSSPEMYLPQIRQCIAPC-PQVCAPACSDICCGFGAYAPNPDTHV 734 >SB_30597| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 698 Score = 27.5 bits (58), Expect = 9.4 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -2 Query: 437 TRCSSGNNAQHFGSYSCSK-ECKRMANNLLSKEEQQTDVSLS 315 TRC+ N S C++ EC ANN+ S+ + Q ++ +S Sbjct: 293 TRCTQCNQRMDSLSGLCTRTECPAAANNMTSQVKTQYEIPVS 334 >SB_53217| Best HMM Match : RVT_1 (HMM E-Value=3.1e-13) Length = 436 Score = 27.5 bits (58), Expect = 9.4 Identities = 10/29 (34%), Positives = 14/29 (48%) Frame = -2 Query: 458 NCCSFRCTRCSSGNNAQHFGSYSCSKECK 372 N C ++ +C + N H SKECK Sbjct: 54 NSCKYKKYKCDNSGNVGHLKRVCKSKECK 82 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,455,640 Number of Sequences: 59808 Number of extensions: 434585 Number of successful extensions: 1622 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1356 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1618 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1560464625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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