Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b04f
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23925| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.082
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 31 0.77
SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1) 30 1.3
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 29 3.1
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_19168| Best HMM Match : rve (HMM E-Value=3.9e-38) 29 4.1
SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_55551| Best HMM Match : CBM_5_12 (HMM E-Value=8.7) 28 5.4
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 7.1
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 28 7.1
SB_30597| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_53217| Best HMM Match : RVT_1 (HMM E-Value=3.1e-13) 27 9.4
>SB_23925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 34.3 bits (75), Expect = 0.082
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 148 RWRVLMRRYEVCARQICFIFNIGHFSLVRHKSRTKFPVIRLYEHHNR 8
RWR L R YE C R ++ I F L R K T+ I H ++
Sbjct: 57 RWRTLERPYEPCRRDEDRLYRIEKFRLTRFKDHTRKAAIFKISHKHK 103
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 341 LLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYIGNYS 454
L C +GC P +C P CT +C + PN A + S
Sbjct: 441 LTCPVGC-PSMCAPSCTPACCAEQQCWPNQPALLAQQS 477
>SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)
Length = 166
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 251 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCL 352
P + TCP C IVTR S T+ +A LC+
Sbjct: 42 PVYTTCPFCQEKIVTRTSFKSGKYTYWTSACLCI 75
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +2
Query: 266 CPSCNTAIV--TRVERVSTTKTHLFAALLCL---IGCWPCVC-IPYCTNSCQNAEHYCPN 427
CP CN ++ ++ T + +C+ + C C YC +C + +YCP
Sbjct: 380 CPLCNESVNGNQKIYFAMDTSYNDLTCQICMDAEVNTAFCPCGHVYCCQTCASNLYYCPL 439
Query: 428 CSAYI 442
C +I
Sbjct: 440 CKTFI 444
>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2671
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 464 SINCCSFRCTRCSSGNNAQHFGSYSCSKECKRMANN 357
SIN C + C +C G + S SC K K +N
Sbjct: 511 SINRCCWECFQCPEGTISSKESSTSCKKCSKEQMSN 546
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 365 PCVCIPYCTNSCQNA-EHYCP-NCSAYIGNY 451
PCV YCTN A EH CP +IG+Y
Sbjct: 859 PCVKGHYCTNGTTTATEHPCPAGGKCWIGHY 889
>SB_19168| Best HMM Match : rve (HMM E-Value=3.9e-38)
Length = 586
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 470 VESINCCSFRCTRCSSGNNAQHFGSYSCSKECKRMANNLLSK 345
VE + + C R ++ N+ F S ++ C+R AN L+ +
Sbjct: 324 VELMKAMKYCCDRLAARTNSLQFLSLKLTRFCRRQANGLVER 365
>SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 452 CSFRCTRCSSGNNAQHFGSYSC 387
C + C RC G + GSY+C
Sbjct: 497 CCWNCQRCEKGTVSSEAGSYAC 518
>SB_55551| Best HMM Match : CBM_5_12 (HMM E-Value=8.7)
Length = 463
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 479 YYFVESINC-CSFRCTRCSSGNNAQHFGSYSCSKEC 375
YY ES N C S NA+H+ Y+ +KEC
Sbjct: 158 YYKKESFNMKTKGECIEKYSNGNAKHWSKYNDAKEC 193
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 392 NSCQNAEHYCP-NCSAYIGNYSS*CS 466
+ C +H C NC+ IGNYS C+
Sbjct: 669 DECATGKHQCAQNCTNIIGNYSCSCT 694
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/72 (25%), Positives = 27/72 (37%)
Frame = +2
Query: 251 PSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNC 430
P H +C C A R + + +++ CL C P C+ ++YC C
Sbjct: 768 PCHESCAECTGAGHDRCTKCNHGLVKVWSQ--CLASCPPSYFFNPRDMQCEPCDYYCSTC 825
Query: 431 SAYIGNYSS*CS 466
GN CS
Sbjct: 826 EG--GNGLRNCS 835
>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 785
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 479 YYFVESINCCSFRCTRCSSGNNAQHFGSYSCS 384
Y+ NCC + CT C G + + + SCS
Sbjct: 534 YWQTRMKNCC-WECTECPQGTISPRYAAPSCS 564
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 308 VSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYI 442
+S+ + +L C+ C P VC P C++ C Y PN ++
Sbjct: 691 LSSPEMYLPQIRQCIAPC-PQVCAPACSDICCGFGAYAPNPDTHV 734
>SB_30597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 437 TRCSSGNNAQHFGSYSCSK-ECKRMANNLLSKEEQQTDVSLS 315
TRC+ N S C++ EC ANN+ S+ + Q ++ +S
Sbjct: 293 TRCTQCNQRMDSLSGLCTRTECPAAANNMTSQVKTQYEIPVS 334
>SB_53217| Best HMM Match : RVT_1 (HMM E-Value=3.1e-13)
Length = 436
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 458 NCCSFRCTRCSSGNNAQHFGSYSCSKECK 372
N C ++ +C + N H SKECK
Sbjct: 54 NSCKYKKYKCDNSGNVGHLKRVCKSKECK 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,455,640
Number of Sequences: 59808
Number of extensions: 434585
Number of successful extensions: 1622
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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