Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b04f
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 33 0.12
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 29 1.9
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ... 29 3.3
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 29 3.3
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 29 3.3
At5g42290.1 68418.m05147 transcription activator-related contain... 28 4.4
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 28 4.4
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 28 5.8
At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib... 28 5.8
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib... 28 5.8
At4g30310.1 68417.m04307 ribitol kinase, putative similar to rib... 28 5.8
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ... 28 5.8
At3g26750.1 68416.m03346 expressed protein 28 5.8
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 27 7.7
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 27 7.7
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 27 7.7
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 27 7.7
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 27 7.7
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 386 CTNSCQNAEHYCPNCSAYIGNYSS 457
C++ C N + CP CS IGNY S
Sbjct: 77 CSSCCTNVSNKCPYCSLAIGNYRS 100
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 101 DLSGTHFVPPHQNPPPYVTQPQP 169
DLS HF HQ PPP P P
Sbjct: 11 DLSFNHFTDQHQPPPPQPPPPPP 33
>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 633
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 443 RCTRCSSGNNAQHFGSYSCS-KECKRM 366
RC CS N +++G Y C+ +C R+
Sbjct: 24 RCEGCSFRNQGEYYGGYRCNDSDCNRV 50
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 386 CTNSCQNAEHYCPNCSAYIGNYSS 457
C++ C + CP+C+ IGN+ S
Sbjct: 65 CSSCCTKLRNKCPSCALPIGNFRS 88
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 80 ANVEYKADLSGTHFVPPHQN--PPPYVTQPQP 169
++ E S ++ +PPHQ+ PPPY P P
Sbjct: 372 SSTENNGASSSSYMMPPHQSYPPPPYGYMPSP 403
>At5g42290.1 68418.m05147 transcription activator-related contains
weak similarity to beta-cell E-box transcription
activator 1 gi|529197|gb|AAA65702
Length = 110
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 128 PHQNPPPYVTQPQP 169
PHQ+ PPY++Q QP
Sbjct: 18 PHQHQPPYISQMQP 31
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -2
Query: 455 CCSFRCTRCSSGNNAQHFGSYSCSKECKRMANNLLSKEEQQTDVSLSWK 309
C F C R +GNN + S S S ++++ S + ++ W+
Sbjct: 10 CIGFGCGRIGTGNNKRSSSSSSSSSSFSSLSSSSSSSSSSCNNNNIKWE 58
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 116 HFVPPHQNPPPYVTQPQP 169
HF PPHQ PP P P
Sbjct: 48 HFSPPHQPPPSPYPHPHP 65
>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
ribitol kinase [Klebsiella pneumoniae]
gi|2905643|gb|AAC26495
Length = 451
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 15 WCSYNRITGNLVRDLCLTKLKWPML 89
W SY R TG+ R LC T KW L
Sbjct: 59 WLSY-RATGDDTRSLCTTVCKWTYL 82
>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
ribitol kinase [Klebsiella pneumoniae]
gi|2905643|gb|AAC26495
Length = 579
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 15 WCSYNRITGNLVRDLCLTKLKWPML 89
W SY R TG+ R LC T KW L
Sbjct: 177 WLSY-RATGDDTRSLCTTVCKWTYL 200
>At4g30310.1 68417.m04307 ribitol kinase, putative similar to
ribitol kinase [Klebsiella pneumoniae]
gi|2905643|gb|AAC26495
Length = 499
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 15 WCSYNRITGNLVRDLCLTKLKWPML 89
W SY R TG+ R LC T KW L
Sbjct: 177 WLSY-RATGDDTRSLCTTVCKWTYL 200
>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1780
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 15 WCSYNRITGNLVRDLCLTKLKWPM 86
W +Y+ I D C +KLKWP+
Sbjct: 249 WRNYDDINEYFWTDRCFSKLKWPL 272
>At3g26750.1 68416.m03346 expressed protein
Length = 526
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Frame = +2
Query: 410 EHYCPNCSAYIGNYSS*CSQQNSKNANCV*FIHKYMPVSSWDHKS----KPYTMTSMIGS 577
E CP CS+ +G Y S V Y+ SS +S + YT+ M +
Sbjct: 352 EFACPECSSPLGAYPSGVGSNGKPIDGGVRLFKCYISTSSTTGESSDVFRKYTLERMFTN 411
Query: 578 TLKWYCRHALSFYICI 625
L + LSF++ +
Sbjct: 412 QLVECSKEELSFHVLV 427
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 485 HFYYFVESINCCSFRCTRCSSGNNAQHFGSYSCSK 381
H F S+ + C C G H+G+YSC+K
Sbjct: 261 HRIIFTSSLPSAKWSCGVCR-GEVDNHYGAYSCNK 294
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 121 EVCARQICFIFNIGHFSLVRHKSRTKFPVIRLY 23
E+ +QI + + FS VRH R K +IR++
Sbjct: 561 EISWKQIVQVLLLNKFSHVRHTKRNKSQIIRMH 593
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 121 EVCARQICFIFNIGHFSLVRHKSRTKFPVIRLY 23
E+ +QI + + FS VRH R K +IR++
Sbjct: 561 EISWKQIVQVLLLNKFSHVRHTKRNKSQIIRMH 593
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 121 EVCARQICFIFNIGHFSLVRHKSRTKFPVIRLY 23
E+ +QI + + FS VRH R K +IR++
Sbjct: 561 EISWKQIVQVLLLNKFSHVRHTKRNKSQIIRMH 593
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 386 CTNSCQNAEHYCPNCSAYIGNYSS 457
C++ C+ ++ CP CS IG + S
Sbjct: 70 CSSCCKKVKYKCPYCSLRIGFFRS 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,181
Number of Sequences: 28952
Number of extensions: 295000
Number of successful extensions: 1116
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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