Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b02r
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3EXS3 Cluster: Putative ribonuclease; n=1; Maconellico...    66   5e-10
UniRef50_Q8MSF5 Cluster: GM16138p; n=12; Arthropoda|Rep: GM16138...    58   1e-07
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    56   6e-07
UniRef50_A7RHU7 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ...    42   0.017
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    39   0.092
UniRef50_Q6ZRB8 Cluster: CDNA FLJ46490 fis, clone THYMU3027540; ...    37   0.37 

>UniRef50_A3EXS3 Cluster: Putative ribonuclease; n=1;
           Maconellicoccus hirsutus|Rep: Putative ribonuclease -
           Maconellicoccus hirsutus (hibiscus mealybug)
          Length = 72

 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 30/48 (62%), Positives = 36/48 (75%)
 Frame = -2

Query: 653 SIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVSGHQFWLNNRSSVSM 510
           S E F      GY  NA NCWIAA LY+ITL+VSGHQF+LN+R+S+SM
Sbjct: 25  SHEKFYSVANTGYDQNAYNCWIAACLYVITLLVSGHQFYLNSRNSISM 72


>UniRef50_Q8MSF5 Cluster: GM16138p; n=12; Arthropoda|Rep: GM16138p -
           Drosophila melanogaster (Fruit fly)
          Length = 95

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = -2

Query: 656 HSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVSGHQFWLNNR 525
           HS+EDF     + Y  NA NCWIAA +Y++TL++S  QF++N+R
Sbjct: 48  HSLEDFYAAANRAYNQNAYNCWIAACIYVLTLLLSAQQFYMNSR 91


>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +2

Query: 206 KWADDLWQYAGKNWMRKVEDRSLWRTMGEVYIQQWRDTG 322
           +W DDL + AG  WM+  +DRSLW+++GE ++QQW   G
Sbjct: 459 RWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWTSFG 497


>UniRef50_A7RHU7 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 88

 Score = 41.5 bits (93), Expect = 0.017
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = -2

Query: 626 EKGYTLNAQNCWIAALLYLITLVVSGHQFWLNNRS 522
           + G++  A+NC+IAA +Y +TL++S HQ W+N R+
Sbjct: 48  DAGFSSTAKNCFIAAGIYGVTLIISIHQKWVNART 82


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 39.1 bits (87), Expect = 0.092
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 206 KWADDLWQYAGK-NWMRKVEDRSLWRTMGEVYIQQWRDTG 322
           +W D+L Q+ G+ NW ++  +R +W    E +I QW D G
Sbjct: 398 RWRDELQQFWGQTNWHQQALNRGIWNHHAEAFILQWIDNG 437


>UniRef50_Q6ZRB8 Cluster: CDNA FLJ46490 fis, clone THYMU3027540;
           n=1; Homo sapiens|Rep: CDNA FLJ46490 fis, clone
           THYMU3027540 - Homo sapiens (Human)
          Length = 129

 Score = 37.1 bits (82), Expect = 0.37
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 21  MYRYYMCGSNTYTYFNNSCIFTQN*IAYNIFYCYYSNHL 137
           MY Y +C S+TY Y  + C++  +   Y    C Y  H+
Sbjct: 1   MYMYVLCISHTYVYITHICMYITHICVYQTHVCVYHTHM 39


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,245,404
Number of Sequences: 1657284
Number of extensions: 11142442
Number of successful extensions: 22876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22873
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)