Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b02r
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    24   1.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   1.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.7  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   6.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 233 HIATSHQPTYLNKTFKLF*-NSF*NWNELSTSI*MIGIVTIKNIICYLILC 84
           +I+TS+     + T  L+  +S  N+NE S+S+    I T   + C +I+C
Sbjct: 30  NISTSNYLYTPSSTIDLYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMC 80



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 352 TQTIKTSSSSACISPLLDVNLSHS 281
           T T  T+SS+   +PL++ N+S S
Sbjct: 11  TTTTTTTSSALNSTPLIEFNISTS 34


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 233 HIATSHQPTYLNKTFKLF*-NSF*NWNELSTSI*MIGIVTIKNIICYLILC 84
           +I+TS+     + T  L+  +S  N+NE S+S+    I T   + C +I+C
Sbjct: 30  NISTSNYLYTPSSTIDLYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMC 80



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 352 TQTIKTSSSSACISPLLDVNLSHS 281
           T T  T+SS+   +PL++ N+S S
Sbjct: 11  TTTTTTTSSALNSTPLIEFNISTS 34


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 75  CIFTQN*IAYNIFYCYYSNHL 137
           C+   N I ++  YCYY++ +
Sbjct: 261 CLIQFNTIVFSFCYCYYNSKM 281



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 75  CIFTQN*IAYNIFYCYYS 128
           C+   N I +   YCYYS
Sbjct: 542 CLIQFNTIVFAFCYCYYS 559


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 636 H*SGKRIYPECTKLLDCGIVVLDYTGCIWTSIL 538
           H  G+ + P  T LL     V  Y+G +WT IL
Sbjct: 110 HTFGRFLAPNLTYLL-----VALYSGYVWTDIL 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,517
Number of Sequences: 336
Number of extensions: 3331
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)