BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b02r (657 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 29 0.45 SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 4.2 SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 4.2 SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 5.5 SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 9.6 >SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 2344 Score = 29.5 bits (63), Expect = 0.45 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -2 Query: 302 GCKPLP*SATMNDPLPFASNFFQHIATSHQPTYLNKTFK 186 GC PLP A D P FQ + +H YL+K FK Sbjct: 2286 GCAPLPIFALTADMQPTMETQFQEVGITH---YLSKPFK 2321 >SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 26.2 bits (55), Expect = 4.2 Identities = 11/31 (35%), Positives = 14/31 (45%) Frame = +3 Query: 549 SRYNQCNQVQQCRNPTILCIQGISFFHFNDE 641 SRYN C + +P +G F F DE Sbjct: 208 SRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238 >SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 506 Score = 26.2 bits (55), Expect = 4.2 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -2 Query: 338 NIVIVSLYLSTAGCKPLP*SATMNDPLPFASNFFQHIATSHQPTY 204 ++ V L AGCK + D +PFAS+FF T+ PT+ Sbjct: 161 DVKAVGKKLIKAGCKNV---VIRCDDIPFASDFFCSRETNMPPTW 202 >SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces pombe|chr 1|||Manual Length = 581 Score = 25.8 bits (54), Expect = 5.5 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = +3 Query: 237 EKIGCER*RIVHCGGLWERFTSSSGEIQ 320 E+I C+ R ++CGG W + IQ Sbjct: 52 ERIPCDPVRFMYCGGTWNGIRNHLDYIQ 79 >SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 1|||Manual Length = 905 Score = 25.0 bits (52), Expect = 9.6 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = +2 Query: 203 NKWADDLWQYAGKNWMRKVEDRSLWRTMGEVYIQQWRD 316 N +D LW+ +N ++ED L V WRD Sbjct: 602 NFGSDSLWKEMSRNLSTELEDPYLRAIFAYVSNSDWRD 639 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,597,170 Number of Sequences: 5004 Number of extensions: 52378 Number of successful extensions: 99 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 99 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 297805304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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