Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b02r
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    32   0.31 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    32   0.31 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    32   0.31 
Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    31   0.72 
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 486 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 653
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 486 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 653
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 486 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 653
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 629 VEKGYTLNAQNCWIAALLYLITLVVSGHQFWLNNRSSVSM 510
           ++  Y   A  CWIAA LY +TL+     FW N  ++  +
Sbjct: 58  IDAKYNEKATQCWIAAGLYAVTLIA---VFWQNKYNTAQI 94


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 564 CNQVQQCRNPTILCIQGIS--FFH 629
           C + +QCR P  LC QG +  F+H
Sbjct: 199 CYKTEQCRKPARLCRQGYACPFYH 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,755
Number of Sequences: 27780
Number of extensions: 283428
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)