Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b02f
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   3.1  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   7.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.3  

>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 157 DVDGRLLLYSSCRSAGGSTI**EKSASFYRRLRH*SGKR 273
           D+D R  LYS+   +GGST+       F   LR  SGK+
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 343 SRYNQCNQVQQCRNPTILCIQGISFFHFNDE 251
           SRYN C   +   +P     +G  F  F DE
Sbjct: 208 SRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 122 HKATVLVHTVCSPFCTI 72
           +K   L HT+C+PF T+
Sbjct: 878 YKGNALGHTICAPFTTL 894


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 141 HTLKTRPQSDSFGPHSLQPIL 79
           H+    PQS+S  P+S+ P+L
Sbjct: 454 HSSSATPQSESSSPNSVSPLL 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,691
Number of Sequences: 5004
Number of extensions: 54583
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)