Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b02f
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    75   3e-14
U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical pr...    54   9e-08
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    32   0.30 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    32   0.30 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    32   0.30 
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 41/98 (41%), Positives = 57/98 (58%)
 Frame = +2

Query: 89  CKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVE 268
           C L GPK+S   +V+SVWG+I L L+GVF+YI+AV L  DL F+       +   VI+ +
Sbjct: 5   CPLMGPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHG---KVPSSVIDAK 61

Query: 269 KGYTLNAQNCWIAALLYLITLVVSGHQFWLNNRSSVSM 382
             Y   A  CWIAA LY +TL+     FW N  ++  +
Sbjct: 62  --YNEKATQCWIAAGLYAVTLIA---VFWQNKYNTAQI 94


>U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical
           protein C46G7.1 protein.
          Length = 93

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +2

Query: 101 GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIEVEKGY 277
           GP  +   L L++WG + + ++G  +Y ++V L EDLP + K    S+  D      K Y
Sbjct: 3   GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLY 62

Query: 278 TLNAQNCWIAALLYL 322
             NA NCWIA  +Y+
Sbjct: 63  QQNAYNCWIACGVYI 77


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 406 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 239
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 406 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 239
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 406 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 239
           ++TTP++LHT    I+    + RYN   + +Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 233 PHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVV 337
           PHS E    E+E+ +    ++C+  AL  L+TLV+
Sbjct: 81  PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 328 CNQVQQCRNPTILCIQGISF-FHFNDEVFDRMRRIFLIKW 212
           C + +QCR P  LC QG +  F+ N +  DR R   L K+
Sbjct: 199 CYKTEQCRKPARLCRQGYACPFYHNSK--DRRRPPALYKY 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,357
Number of Sequences: 27780
Number of extensions: 300285
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)