BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b02f (645 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical p... 75 3e-14 U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical pr... 54 9e-08 U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 32 0.30 U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 32 0.30 M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 32 0.30 Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical pr... 28 4.9 U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical pr... 28 4.9 >Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical protein F49C12.12 protein. Length = 95 Score = 75.4 bits (177), Expect = 3e-14 Identities = 41/98 (41%), Positives = 57/98 (58%) Frame = +2 Query: 89 CKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVE 268 C L GPK+S +V+SVWG+I L L+GVF+YI+AV L DL F+ + VI+ + Sbjct: 5 CPLMGPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHG---KVPSSVIDAK 61 Query: 269 KGYTLNAQNCWIAALLYLITLVVSGHQFWLNNRSSVSM 382 Y A CWIAA LY +TL+ FW N ++ + Sbjct: 62 --YNEKATQCWIAAGLYAVTLIA---VFWQNKYNTAQI 94 >U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical protein C46G7.1 protein. Length = 93 Score = 54.0 bits (124), Expect = 9e-08 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = +2 Query: 101 GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIEVEKGY 277 GP + L L++WG + + ++G +Y ++V L EDLP + K S+ D K Y Sbjct: 3 GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLY 62 Query: 278 TLNAQNCWIAALLYL 322 NA NCWIA +Y+ Sbjct: 63 QQNAYNCWIACGVYI 77 >U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated protein 104, isoforma protein. Length = 1584 Score = 32.3 bits (70), Expect = 0.30 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 406 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 239 ++TTP++LHT I+ + RYN + +Q R N + Q I + + E+ D+ Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595 >U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated protein 104, isoformb protein. Length = 1628 Score = 32.3 bits (70), Expect = 0.30 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 406 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 239 ++TTP++LHT I+ + RYN + +Q R N + Q I + + E+ D+ Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595 >M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related protein protein. Length = 1584 Score = 32.3 bits (70), Expect = 0.30 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 406 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTILCIQGISFFHFNDEVFDR 239 ++TTP++LHT I+ + RYN + +Q R N + Q I + + E+ D+ Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595 >Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical protein W01D2.3 protein. Length = 243 Score = 28.3 bits (60), Expect = 4.9 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 233 PHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVV 337 PHS E E+E+ + ++C+ AL L+TLV+ Sbjct: 81 PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115 >U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical protein C34D10.2 protein. Length = 675 Score = 28.3 bits (60), Expect = 4.9 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -3 Query: 328 CNQVQQCRNPTILCIQGISF-FHFNDEVFDRMRRIFLIKW 212 C + +QCR P LC QG + F+ N + DR R L K+ Sbjct: 199 CYKTEQCRKPARLCRQGYACPFYHNSK--DRRRPPALYKY 236 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,712,357 Number of Sequences: 27780 Number of extensions: 300285 Number of successful extensions: 724 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 722 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1423653030 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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