Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b02f
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    31   0.50 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    31   0.50 
At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR ...    29   3.5  
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    28   6.1  
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    27   8.1  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 137  VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEK 271
            +W ++ L L  VF   +A       PF ++ P H+IED  +E EK
Sbjct: 1148 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1192


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 137  VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEK 271
            +W ++ L L  VF   +A       PF ++ P H+IED  +E EK
Sbjct: 1147 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1191


>At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 847

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 29  WSIFSIKDFDYLAQKLYKMGCKLCGPKLSLCGLVLSVW 142
           WS   +KD +     L+ +  K  G +L LC L LSV+
Sbjct: 383 WSSLRVKDDNIHVSSLFDLSFKDMGHELKLCFLYLSVF 420


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 534 HITQTIKTSSSSACISPLLDVNLSHSP 614
           H + ++ +SSSS  +SP   +NLS SP
Sbjct: 22  HHSSSLSSSSSSLSLSPKQPINLSSSP 48


>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 202 QQSDSSNIIKDAHQRQLNDAPYAQN*ATKRQFWSTQFAAH 83
           Q+     I K+A +  L++        TK ++W+T F+AH
Sbjct: 640 QKMKCEAITKEAMEEFLDEVDAVGGVGTKGEYWTTYFSAH 679


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,760
Number of Sequences: 28952
Number of extensions: 267433
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)