Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b01f
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35070.1 68417.m04978 expressed protein                             29   2.0  
At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein ...    28   3.5  
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    27   8.2  
At4g14280.1 68417.m02201 hypothetical protein                          27   8.2  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    27   8.2  

>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 318 CRGRGRFNFRHSPVQKLGTKRISLQCTNLGTLRLICPPVKHMCICL 455
           C G G  N    P +K+        C + G  R++  P +H+C C+
Sbjct: 197 CGGEGDGN--SLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCM 240


>At5g18180.1 68418.m02134 Gar1 RNA-binding region family protein
           contains Pfam profile PF04410: Gar1 protein RNA binding
           region
          Length = 189

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 264 QGRPSPGSRG---VPVRDRPPCRGRGRFNFRHSP 356
           Q +   G RG   VP R R P RGRG F  R +P
Sbjct: 133 QPKGQSGGRGEGRVPPRGRGPPRGRGNFRGRGAP 166


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -1

Query: 330 PAPDKADGRELGHPYFPGSD---GPDASTGGRRVPHVDSLRAGCRS 202
           PA  K   + LG P+  G D   GP    G RR    D  R G +S
Sbjct: 89  PATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKS 134


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 293 TPTSRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSF 165
           TP  R  T L  +PA    LTL A  LAV  ++ + L  SL F
Sbjct: 27  TPEPRRPTQLPPVPAPEKKLTLFALRLAVLEKIASGL-GSLGF 68


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
            identical to P-glycoprotein GI:3849833 from [Arabidopsis
            thaliana]; homologous to mammalian mdr gene,contains
            ATP-binding cassette; related to multi drug resistance
            proteins
          Length = 1286

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 369  RVSELESDES*TDPAPDKADGR-ELGHPYFPGSDGPD 262
            R +E+E D+  T P PD+  G  EL H  F     PD
Sbjct: 1002 RKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPD 1038


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,707,039
Number of Sequences: 28952
Number of extensions: 182305
Number of successful extensions: 423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)