Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a24f
         (615 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    27   0.64 
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    25   1.5  
Y17689-1|CAA76814.1|  111|Anopheles gambiae gSG2 protein protein.      25   1.9  
AJ130950-1|CAA10259.1|  114|Anopheles gambiae SG2 protein protein.     25   1.9  
AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P...    25   2.6  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   2.6  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   3.4  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   7.8  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   7.8  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 33  LKLITLLAIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHF 179
           LK  T ++I  A  N   ++ +   GS + YYY  N  R  ITL + ++
Sbjct: 301 LKQSTGVSITLADGNETVVKGV---GSGHLYYYEENGDRRKITLNDVYY 346


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
            protein I protein.
          Length = 1340

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 87   IQNLE-RFG--SLNKYYYYSNAQRNSITLT 167
            IQN+E R+G  S+  YYY    +RN  T+T
Sbjct: 1258 IQNMEIRYGGTSVVLYYYKMGTERNCFTVT 1287


>Y17689-1|CAA76814.1|  111|Anopheles gambiae gSG2 protein protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 310 SPLVKNASLTIGLIVVVAVP 251
           S LV  A+L++ L+VVVA+P
Sbjct: 3   SMLVAFATLSVALVVVVAIP 22


>AJ130950-1|CAA10259.1|  114|Anopheles gambiae SG2 protein protein.
          Length = 114

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 310 SPLVKNASLTIGLIVVVAVP 251
           S LV  A+L++ L+VVVA+P
Sbjct: 3   SMLVAFATLSVALVVVVAIP 22


>AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P450
           reductase protein.
          Length = 679

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 165 TEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTA 260
           TE   P G+ +  PF    DIV+++   +GTA
Sbjct: 5   TETEVPAGSVSDEPFLGPLDIVLLVSLLAGTA 36


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 270 INPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVM 374
           +NPI+      SGD+N    +W S S +    AV+
Sbjct: 112 VNPII-----ISGDFNAWATEWGSKSTNARGNAVL 141


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 411  LKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 521
            L+ +KL + K H    ++   +  +  R  EGK+ R+
Sbjct: 972  LEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRL 1008


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 294  FLTSGDYNVIVVDWSS-FSLSTYSTAVMAVTG--VGSSIATFLKNLKLPLNKVHIVGFNL 464
            +L +G+  V ++D    F++    + V A  G  +G+S A    N      K  IVG  +
Sbjct: 2669 YLYAGNSPVSLIDPDGQFAILLIVSIVTAAVGAYLGASAANKSWNPAKWEVKKAIVGATM 2728

Query: 465  GAHVAGVTGRNLEGKVARITG 527
            GA V G     + G +  + G
Sbjct: 2729 GAIVGGFAPVGIAGSITFLAG 2749


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 147 SVHCYSNNIYLNFQIAPSFEWHLRCKRQMRWPT 49
           S++ YSN++Y+ F +    +      R+   P+
Sbjct: 196 SIYSYSNHVYIRFAVGELLQRPAADSRRQEGPS 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,333
Number of Sequences: 2352
Number of extensions: 13577
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)