Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a24f
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    33   0.11 
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.26 
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.26 
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein...    31   0.61 
At5g40380.1 68418.m04898 protein kinase family protein contains ...    29   1.9  
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    29   1.9  
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ...    29   3.2  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    28   5.7  
At4g21500.1 68417.m03108 expressed protein  ; expression support...    28   5.7  
At4g21326.1 68417.m03081 subtilase family protein contains simil...    28   5.7  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    28   5.7  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    27   7.5  
At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing...    27   7.5  
At1g30090.1 68414.m03678 kelch repeat-containing F-box family pr...    27   7.5  
At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding protei...    27   9.9  

>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVARITG 527
            + GK+ +  G
Sbjct: 454 TISGKIGKEVG 464


>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVAR 518
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVAR 518
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to unknown protein (emb|CAB88055.1)
          Length = 212

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 90  QNLERFGSLNKYYYYSNAQRNSITLTEDH---FPTG--NDTAAPFNNNSDIVVIIH 242
           ++L  +GS   +Y+Y    +N +T T+ +    PTG   D   P  N  ++V I H
Sbjct: 53  RDLPGYGSEEHWYFYCKKPKNQVTRTKSYNLWIPTGEKTDVLDPKKNGGELVGIKH 108


>At5g40380.1 68418.m04898 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 591

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +3

Query: 162 LTEDHFPTGNDTAAPFNNNSDIVVIIHG-----HSGTATTTINPIVK 287
           LTE  +P  + T+ PF   S +   + G     HS  +TTT N +VK
Sbjct: 528 LTERDYPIPSPTSPPFLRVSSLTTDLEGSSTISHSTNSTTTFNTMVK 574


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
            PF03109: ABC1 family
          Length = 1009

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = +3

Query: 120  KYYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFL 299
            K +  +++ R S T +       N +A     NSD     H H        NP + DAF+
Sbjct: 855  KQFMSASSSRESNTESLARLVDTNSSAGKTEINSDD----HQHD-IHNMFSNPRIHDAFM 909

Query: 300  TSGDYNVIVVDWSSFSL 350
             +GDY+ +VV    F L
Sbjct: 910  GAGDYSGLVVPDGKFGL 926


>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
            profile: PF00082 subtilase family
          Length = 856

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 29/109 (26%), Positives = 47/109 (43%)
 Frame = +3

Query: 126  YYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTS 305
            Y  +N  RN+ T++       + T +  NN   +  ++   +G  T T++ I     L  
Sbjct: 739  YTGTNCLRNNATISGSDLNLPSITVSKLNNTRTVQRLMTNIAGNETYTVSLITPFDVL-- 796

Query: 306  GDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIV 452
               NV    +S  S  T   +V+      SSI++F   +KL  N  HIV
Sbjct: 797  --INVSPTQFSIASGETKLLSVILTAKRNSSISSF-GGIKLLGNAGHIV 842


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 233 NNTRSQWHCYDDDQPYC*RRIFNKWR---L*RYRC 328
           NNTRS+  C+  D+  C  ++  KW+      YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648


>At4g21500.1 68417.m03108 expressed protein  ; expression supported
           by MPSS
          Length = 215

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 90  QNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAPFN 212
           + +ERF SL+  Y  S+++ +S + +E +FP   D  +P N
Sbjct: 122 RKMERFPSLSLCYPESDSESDSASSSEFNFPEIGDWNSPEN 162


>At4g21326.1 68417.m03081 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 690

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = +3

Query: 249 SGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKL 428
           S  ATTTIN         SGDY   +V    F    Y      +  + SS +     +K+
Sbjct: 357 SALATTTINKAAGLIVARSGDYQSDIVYNQPFIYVDYEVGAKILRYIRSSSS---PTIKI 413

Query: 429 PLNKVHIVGFNLGAHVAGVTGRNLEG 506
              K  +VG  +   V G + R   G
Sbjct: 414 STGKT-LVGRPIATQVCGFSSRGPNG 438


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 NNTRSQWHCYDDDQPYC*RRIFNKWR 310
           NNTRS+  C+  D+  C  ++  KW+
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 516 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTD 614
           R+TG+ P A D  +++  +G   AQ  E IH +
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386


>At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing
           enzyme C-terminal domain-containing protein / hydrolase,
           alpha/beta fold family protein contains Pfam profiles
           PF01188: Mandelate racemase / muconate lactonizing
           enzyme, C-terminal domain, PF00561: hydrolase,
           alpha/beta fold family
          Length = 656

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
 Frame = +3

Query: 210 NNNSDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTY----STAVMA 377
           N    + + +HG  GT    I PI+      SG    I VD      S      S    +
Sbjct: 377 NAEGSVALFLHGFLGTGEEWI-PIMTGI---SGSARCISVDIPGHGRSRVQSHASETQTS 432

Query: 378 VTGVGSSIATFLKNL--KLPLNKVHIVGFNLGAHVAGVTGRNLEGKV--ARITGLDPSAR 545
            T     IA  L  L  ++   KV IVG+++GA +A         K+  A +    P  +
Sbjct: 433 PTFSMEMIAEALYKLIEQITPGKVTIVGYSMGARIALYMALRFSNKIEGAVVVSGSPGLK 492

Query: 546 DWENNVLRLGTNDAQ 590
           D     +R  T+D++
Sbjct: 493 DPVARKIRSATDDSK 507


>At1g30090.1 68414.m03678 kelch repeat-containing F-box family
           protein similar to SP|O95198 Kelch-like protein 2
           (Actin-binding protein Mayven) {Homo sapiens}; contains
           Pfam profiles PF01344: Kelch motif, PF00646: F-box
           domain
          Length = 398

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -1

Query: 150 FSVHCYSNNIYL---NFQIAPSFEWHLRCKRQMRW 55
           F+V+CY N +Y+   N  +A    W    K  +RW
Sbjct: 342 FAVNCYGNRVYVVGRNLHLAVGNIWQSENKFAVRW 376


>At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding
           protein-related contains weak similarity to CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 452

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVT 488
           A +A     S IA   + +KLP+      GF+L  +V+GVT
Sbjct: 332 AFLAEPAYRSVIAAVRRRVKLPIADALTPGFDLCVNVSGVT 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,074
Number of Sequences: 28952
Number of extensions: 261688
Number of successful extensions: 674
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)