Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a23r
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 27 2.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 4.7
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 4.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 6.3
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 26 6.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.3
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 6.3
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 6.3
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 8.3
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +2
Query: 317 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMND--NSV 490
STP +S + L + + ++ +N + + S TA + ++S+SV+ +S
Sbjct: 3357 STPVTSSSVLNSSTPITSSTVVNSSTPITSS----TALNTSTPITSSSVLNSSTPITSST 3412
Query: 491 HVMHNTPTVGKGGTNTNTPTACSVTV 568
V +TP NT+TP S V
Sbjct: 3413 VVNSSTPITSSTALNTSTPITSSTVV 3438
Score = 26.6 bits (56), Expect = 3.6
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 317 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMND--NSV 490
STP +S L + + +S +N + + S V T+ ++S+SV+ +S
Sbjct: 1293 STPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTS----TPITSSSVLNSSTPITSST 1348
Query: 491 HVMHNTPTVGKGGTNTNTPTACSVTVWT 574
V +TP NT+TP S V T
Sbjct: 1349 VVNSSTPITSSTVVNTSTPITSSTVVNT 1376
Score = 25.8 bits (54), Expect = 6.3
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 317 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMND--NSV 490
STP +S + + + +S +N + + S TA + ++S+SV+ +S
Sbjct: 2133 STPITSSTVVNSSTPITSSSVLNSSTPITSS----TALNTSTPITSSSVLNSSTPITSST 2188
Query: 491 HVMHNTPTVGKGGTNTNTPTACSVTVWT 574
V +TP NT+TP S V T
Sbjct: 2189 VVNSSTPITSSTVVNTSTPITSSTVVNT 2216
Score = 25.4 bits (53), Expect = 8.3
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 317 STPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHV 496
STP +S ++++ + I +S + T+ + S + + +T SST++ S V
Sbjct: 873 STPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNS-STPIT-SSTALNTSTPITSSSV 929
Query: 497 MHN-TPTVGKGGTNTNTPTACS 559
+++ TP G NT+TP S
Sbjct: 930 LNSSTPITSSTGLNTSTPITSS 951
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 574 CPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADSDLCILRSNSNIAYNNN 395
C G + + I + +F S + H +HPNY+ R +S+ L + I N N
Sbjct: 315 CELGKESSLFSISMVKSFLVSADMAH-----AMHPNYSSRYENSNTPFLNKGTVIKVNAN 369
Query: 394 VR-PINIAG 371
R N AG
Sbjct: 370 QRYTTNSAG 378
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.6
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 5/144 (3%)
Frame = +2
Query: 206 SGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPN---NLVITKIVIGTS 376
S +T+ S+T + I+ +++ L + S T+S +L ++ T
Sbjct: 745 SSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTI 804
Query: 377 NINRTNVVVISYVGITA*DAEVTVSSTSVIV--GMNDNSVHVMHNTPTVGKGGTNTNTPT 550
+ + TN S+ T + S+TS+ G+N NS+ ++ T T T +
Sbjct: 805 STSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAYTTDS 864
Query: 551 ACSVTVWTVSGTKDRSLVKDVSTT 622
S T T G + +S+T
Sbjct: 865 VTSTTALTSQGPSSSVVSSSLSST 888
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 415 WNYCVRCRGHC-QQYVCYSWDE**FCSRYAQH 507
W C RC+G Q +C S D F R A+H
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIAEH 1068
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 26.2 bits (55), Expect = 4.7
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 1/132 (0%)
Frame = +2
Query: 212 DSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVITKIVIGTSNINRT 391
++ V+GS+ + I G E+ + P+ T T ++ T + T
Sbjct: 985 ETIVSGSIPFTSTIPAQGTTSGTVEV--VEPTAGTVTETIISGSVGYTSTFPAQGTTSGT 1042
Query: 392 NVVVISYVG-ITA*DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTV 568
VV G +T ++ TS I S V PT G + T + T+ T
Sbjct: 1043 VEVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEIVVPTAGTVTSTTGSGTSWFTTT 1102
Query: 569 WTVSGTKDRSLV 604
+GT+ S++
Sbjct: 1103 VPATGTRSGSVI 1114
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 625 SCGGNILNQRSILSAAHCPYGDA 557
+ GN+LN + S ++CPY A
Sbjct: 1451 TAAGNLLNPNATTSCSYCPYQTA 1473
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 69 GKR-RSAQYCPQEQTPTRTRLWRRGPPESPWHWSRP 173
GKR R + Y PQE +L +R + PW +RP
Sbjct: 57 GKRLRKSMYQPQEIQWPEDKLRKRFYRDHPWELARP 92
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.3
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Frame = +2
Query: 317 STP-TSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVH 493
+TP T + + V + I ++ NRT+ S I+ + SSTS + +
Sbjct: 622 TTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSN 681
Query: 494 VMHNTPTVGKGGTNTNTP---TACSVTVWTVSGTKDRSL-VKDVSTT 622
V ++ TV T+ P T +T ++S + S VK ST+
Sbjct: 682 VTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTS 728
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 652 TWNWNQWWQSCGG 614
T N+ WW SCGG
Sbjct: 114 TVNYPTWWDSCGG 126
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 197 QHVSGDSTVNGSVTLDAGILIDGPDLDVTELLR 295
QH+SG S G +TLD+ +L D + VTE R
Sbjct: 190 QHISGTSPSPGFITLDS-LLSDVNRMIVTEQAR 221
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 355 GDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQ 239
G + VWA + S ++ R +++W ++ CVQ
Sbjct: 505 GHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQ 543
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,919
Number of Sequences: 5004
Number of extensions: 70525
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -