Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a21r
         (706 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   1.0  
Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein...    24   5.4  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   7.1  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   9.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   9.4  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 286  GSERPQDAAENADFSFSGTD*C*NSGN 366
            GSE+P++A E +  + SGTD   +SG+
Sbjct: 1348 GSEKPKNAIEPSQEAVSGTDNANDSGD 1374


>Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein
           protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 129 VNNFLEKIPVYLTDYAAEVS 70
           VN   EK+P YL++ +A V+
Sbjct: 88  VNAIYEKLPAYLSEVSARVN 107


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 516 DGYAGSWSPPGASDI-INFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASV 343
           DG  G    P   +  ++ +GR T     D+ S+    +      +N++LAV     SV
Sbjct: 315 DGKLGGVITPNDGECHLDHNGRYTHSTTQDYPSISQINLKVKQNAINVILAVTAEELSV 373


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 410 RKCRELKSSALTSVTRPEK 466
           R C ELKSS +  +TR E+
Sbjct: 760 RMCWELKSSTIVMMTRLEE 778


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 244  SGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD 345
            S ++ ND +K  +SGS + Q   E   F F   D
Sbjct: 1270 SVTIKNDPMK--TSGSTQQQQQMERQQFGFGNND 1301


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,780
Number of Sequences: 2352
Number of extensions: 12935
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)