Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a21r
         (706 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    34   0.16 
L11451-1|AAA28918.1|  786|Drosophila melanogaster serine protein...    32   0.87 
AY119618-1|AAM50272.1|  683|Drosophila melanogaster LD44584p pro...    32   0.87 
AE014297-2154|AAF55277.1|  787|Drosophila melanogaster CG4316-PA...    32   0.87 
AE014297-1930|AAF55127.2| 1363|Drosophila melanogaster CG31304-P...    30   3.5  
L08825-1|AAA28914.1|  723|Drosophila melanogaster single-strande...    29   6.2  

>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
            protein.
          Length = 1286

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +2

Query: 128  TAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRT 307
            T+GPT+   R   +    +P     P S T   ++R T     +TT +  S P      T
Sbjct: 984  TSGPTTTTPRSTTKTSTCAP-TTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTT----T 1038

Query: 308  RLKMRISPS-AEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 454
              +   +PS + PT      T  T  SR PT  T R   +  + A T+ T
Sbjct: 1039 TPRSTTTPSTSRPTTTTPRSTTTTSTSR-PTTTTPRSTTKTSTCAPTTTT 1087



 Score = 29.5 bits (63), Expect = 4.7
 Identities = 29/109 (26%), Positives = 41/109 (37%)
 Frame = +2

Query: 128 TAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRT 307
           T+GPT+   R        SP     P S T   ++R T     +TT +    P     R+
Sbjct: 504 TSGPTTTTPRSTTTTCTCSP-TTTTPRSTTTPSTSRPTTTTPRSTTTTCTCSPTTTTPRS 562

Query: 308 RLKMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 454
                 + ++ PT      T  T  SR PT  T R      +S  T+ T
Sbjct: 563 ---TTTTSTSRPTTTTPRSTTTTTTSR-PTTTTPRSTTTTSTSGPTTTT 607



 Score = 28.7 bits (61), Expect = 8.1
 Identities = 30/109 (27%), Positives = 41/109 (37%)
 Frame = +2

Query: 128  TAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRT 307
            T+GPT+   R       TS      P S T   ++  T     +TT +  S P     R+
Sbjct: 936  TSGPTTTTPRST-TTTCTSCPTTTTPRSTTTTCTSCPTTTTPRSTTTTCTSGPTTTTPRS 994

Query: 308  RLKMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 454
              K   + +  PT      T  T  SR PT  T R      +S  T+ T
Sbjct: 995  TTK---TSTCAPTTTTPRSTTTTSTSR-PTTTTPRSTTTTTTSRPTTTT 1039


>L11451-1|AAA28918.1|  786|Drosophila melanogaster serine proteinase
           protein.
          Length = 786

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +2

Query: 209 SLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSR 388
           S T   ++  T    + TT  R + P     RT       P   PT A +  +  T  S+
Sbjct: 403 SSTTSTTSSTTSTTTTTTTTRRTTTPTTTTRRTTTNKPTRPYQRPTTATSSSSTSTTSSK 462

Query: 389 VPT*LTRRKCRELKSSALTSVTRPEK 466
            PT  T R      SS+   VT  ++
Sbjct: 463 TPT--TTRPISSSSSSSSGIVTSSQR 486


>AY119618-1|AAM50272.1|  683|Drosophila melanogaster LD44584p
           protein.
          Length = 683

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +2

Query: 209 SLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSR 388
           S T   ++  T    + TT  R + P     RT       P   PT A +  +  T  S+
Sbjct: 300 SSTTSTTSSTTSTTTTTTTTRRTTTPTTTTRRTTTNKPTRPYQRPTTATSSSSTSTTSSK 359

Query: 389 VPT*LTRRKCRELKSSALTSVTRPEK 466
            PT  T R      SS+   VT  ++
Sbjct: 360 TPT--TTRPISSSSSSSSGIVTSSQR 383


>AE014297-2154|AAF55277.1|  787|Drosophila melanogaster CG4316-PA
           protein.
          Length = 787

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +2

Query: 209 SLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSR 388
           S T   ++  T    + TT  R + P     RT       P   PT A +  +  T  S+
Sbjct: 404 SSTTSTTSSTTSTTTTTTTTRRTTTPTTTTRRTTTNKPTRPYQRPTTATSSSSTSTTSSK 463

Query: 389 VPT*LTRRKCRELKSSALTSVTRPEK 466
            PT  T R      SS+   VT  ++
Sbjct: 464 TPT--TTRPISSSSSSSSGIVTSSQR 487


>AE014297-1930|AAF55127.2| 1363|Drosophila melanogaster CG31304-PA
            protein.
          Length = 1363

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 118  PREDPCLPDGLRSRGQPCSGVTSPNSSS--TRLPVNYLEPI 2
            P++ P  P   R R  P +GV SPNSSS  +  P +Y  PI
Sbjct: 1125 PKKPPLPPIACRPR--PSNGVNSPNSSSPGSAPPAHYSPPI 1163


>L08825-1|AAA28914.1|  723|Drosophila melanogaster single-stranded
           recognition proteinprotein.
          Length = 723

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 127 DGWSNFASEEIDL---EVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER 297
           DG S+  S + D    E   D+A  Y S++ +D+D   +  G G  S+   K K   SE+
Sbjct: 469 DGDSDEESTDEDFKPNENESDVAEEYDSNEESDSDEDSDASGGGGDSDGAKKKKEKKSEK 528

Query: 298 PQ 303
            +
Sbjct: 529 KE 530


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,821,790
Number of Sequences: 53049
Number of extensions: 587595
Number of successful extensions: 2087
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2072
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)