Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a21f
         (599 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   0.81 
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   5.7  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   7.5  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   7.5  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 0.81
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 426  GSERPQDAAENADFSFSGTD*C*NSGN 346
            GSE+P++A E +  + SGTD   +SG+
Sbjct: 1348 GSEKPKNAIEPSQEAVSGTDNANDSGD 1374


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 196 DGYAGSWSPPGASDI-INFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASV 369
           DG  G    P   +  ++ +GR T     D+ S+    +      +N++LAV     SV
Sbjct: 315 DGKLGGVITPNDGECHLDHNGRYTHSTTQDYPSISQINLKVKQNAINVILAVTAEELSV 373


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 302 RKCRELKSSALTSVTRPEK 246
           R C ELKSS +  +TR E+
Sbjct: 760 RMCWELKSSTIVMMTRLEE 778


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 468  SGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD 367
            S ++ ND +K  +SGS + Q   E   F F   D
Sbjct: 1270 SVTIKNDPMK--TSGSTQQQQQMERQQFGFGNND 1301


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,773
Number of Sequences: 2352
Number of extensions: 10740
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)