Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a20r
(721 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 26 0.31
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 24 1.7
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 24 1.7
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 24 1.7
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 24 1.7
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 2.9
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 6.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 6.7
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 22 6.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 8.9
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 8.9
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 8.9
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 26.2 bits (55), Expect = 0.31
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -1
Query: 208 SVQHRSGDNRK*LPRIYS*NGYCQTCKAWVWNVPSKYRHEVPIPFVMP 65
S+ +R+ N Y+ N Y CK +N+ Y ++P+P +P
Sbjct: 84 SLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNI--NYIEQIPVPVPVP 129
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 1.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 160 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 77
Y+ N Y CK +N+ Y ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 1.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 160 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 77
Y+ N Y CK +N+ Y ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.8 bits (49), Expect = 1.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 160 YS*NGYCQTCKAWVWNVPSKYRHEVPIP 77
Y+ N Y CK +N+ Y ++PIP
Sbjct: 100 YNNNNYNNNCKKLYYNI--NYIEQIPIP 125
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 441 DWENNVLRLGTNDAQYVEVIH 379
DW N+ + G N + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 243 AATITHGKHYGNQCSTEAEITANN 172
A+ + K+Y CSTE +T N
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLTKQN 464
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.8 bits (44), Expect = 6.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 76 FVMPTKLKTKFSVMTNKISFYINY 5
FV T L + VM + +SF+IN+
Sbjct: 244 FVFQTYLPSILIVMLSWVSFWINH 267
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 6.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 690 LTSGDYNXIVVDWSSF 643
+ +GDY + +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 21.8 bits (44), Expect = 6.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 690 LTSGDYNXIVVDWSSF 643
+ +GDY + +WSSF
Sbjct: 85 IQNGDYVVLETEWSSF 100
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 48 FVLSFVGITNGMGTSCRY 101
F+LS VG+ G+G R+
Sbjct: 28 FILSVVGLAIGLGNLWRF 45
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 48 FVLSFVGITNGMGTSCRY 101
F+LS VG+ G+G R+
Sbjct: 81 FILSVVGLAIGLGNLWRF 98
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 96 RYLLGTFQTHALQVWQYPFQL*ILGNYLRLSP 191
R++ + HA ++QY F + I R+SP
Sbjct: 350 RHVQAEAEKHAAMLYQYNFNIIISEPTERISP 381
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,625
Number of Sequences: 438
Number of extensions: 4812
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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