Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a20f
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 87 1e-17
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 75 4e-14
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064) 71 6e-13
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 30 1.8
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043) 29 4.1
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31) 28 7.1
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_22836| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 87.0 bits (206), Expect = 1e-17
Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 18/153 (11%)
Frame = +3
Query: 207 FNNNWDIVVIIHGHSG-TATTTINPIV-------KDAFLTSGDYNVIVVDWSSFSLSTYS 362
FN + V+IIHG +G T T+I V K+ L GD+NVI+VDW + ++
Sbjct: 101 FNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPMKNELLWEGDFNVIIVDWMRGAWFPFT 160
Query: 363 TAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGK---VARI 521
AV VG+ A L+ L+ L VH++GF+ GAHVAG GR ++ + + RI
Sbjct: 161 RAVANTRLVGAQTARLLQILEERSGRKLAYVHVIGFSFGAHVAGYVGRRMKKRGRMIDRI 220
Query: 522 TGLDPSARDW---ENNVLRLGTNDAQYVEVIHT 611
T LDP+A W + +RL T+DA +V+VIHT
Sbjct: 221 TALDPAAM-WFHKHHEDVRLDTSDALFVDVIHT 252
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 75.4 bits (177), Expect = 4e-14
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 10/120 (8%)
Frame = +3
Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN-LKLPLNK----VH 446
+KD L D NVI+VDW + Y AV VG+ +A F+K L L ++ H
Sbjct: 115 MKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFH 174
Query: 447 IVGFNLGAHVAGVTGRNLE--GK-VARITGLDPSARDWENNV--LRLGTNDAQYVEVIHT 611
+GF+LGAH++G G+ L+ G+ + RITGLDP+ ++ +RL DAQ+V+VIHT
Sbjct: 175 SIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLDAQFVDVIHT 234
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 71.7 bits (168), Expect = 4e-13
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Frame = +3
Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKV----HI 449
++ A + D NVI DWS + Y A VG+ I +K L ++
Sbjct: 632 IRHALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYL 691
Query: 450 VGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN-NV-LRLGTNDAQYVEVIHTD 614
VGF+LGAH++G GR + K+ RITGLDP++ + N +V +RL +DA +V+V+HTD
Sbjct: 692 VGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMHTD 751
>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
Length = 131
Score = 71.3 bits (167), Expect = 6e-13
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Frame = +3
Query: 189 NDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFS--LSTYS 362
N TA F + +V+IIHG + + +++D L NVI VDW S + L+ Y
Sbjct: 15 NSTA--FRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSGADGLNLYH 72
Query: 363 TAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGKVARIT 524
A VG+ +A + ++ L +VH++G +LGAHVAG G L GKV RIT
Sbjct: 73 VAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVGRIT 130
>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 198 AARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMA 377
A+ ++ VI HG++ + +T+ ++ A L D NV++ DW + Y A
Sbjct: 95 ASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDWGPGADGMYWQATAN 154
Query: 378 VTGVGS 395
VG+
Sbjct: 155 TRLVGA 160
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 237 IHGHSGTATTTINPIVKDAFLTSGDYNVIV---VDWSSFSLSTYSTAVMAVTGVGSSIAT 407
+ G T TTT N ++K A L +GDY V + VD+ + +YS + VT +
Sbjct: 58 VTGPRNTITTTKNALIKAASLKAGDYFVRLSASVDYVQ-GMVSYSYGFVRVTAAKPRV-K 115
Query: 408 FLKN 419
FL+N
Sbjct: 116 FLRN 119
>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Frame = +3
Query: 447 IVGFNLGAHVAGVTG---RNLEG-KVARITG 527
++GF+LG HVAG G +N G K+ RI+G
Sbjct: 21 VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51
>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 399 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
+ +FL + + K H+ G ++G H+ GV +VA + + P+
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 166
>SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAV 371
+K+ L GD+NVI+VDW + ++ AV
Sbjct: 19 MKNELLWEGDFNVIIVDWMRGAWFPFTRAV 48
>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
Length = 183
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
FL + + K H+ G ++G H+ GV +VA + + P+
Sbjct: 1 FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44
>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
Length = 624
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 102 RFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTIN 275
R+ K Y + ++ R + + HF G++ A ++NN D+ + H + T IN
Sbjct: 548 RYSGCEKSYTHPSSLRKHL---KAHFKCGDNPAGIYDNNNDLETPVPPHRESKTARIN 602
>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 107 WKFK*ILLL*QCTEKFDYTHR 169
+K+ I LL C+EKFDY HR
Sbjct: 435 FKWDHIYLLDSCSEKFDYFHR 455
>SB_22836| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = -1
Query: 445 CTLLSGNLRFFKKVAILDPTPVTAITAVEYVDKLNDDQSTTITL*SPLVKNASLTIGLIV 266
C L GN+ ++ P+ I+ + ++ I++ S L +L +G I
Sbjct: 29 CALPLGNISMLSVLSCYCALPLGNISMLSFLSCYCALPLGNISMLSVLSCYCALPLGNIS 88
Query: 265 VVAVPL*PCIIT--TISQLLLKRAAVSFPVGKWSSVSVIEFLCAL 137
+++V C + IS L + + P+G S +SV+ CAL
Sbjct: 89 MLSVLSCYCALPLGNISMLSVLSCYCALPLGNISMLSVLSCYCAL 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,675,361
Number of Sequences: 59808
Number of extensions: 409502
Number of successful extensions: 1061
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -