Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a19r
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    29   2.5  
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    27   5.7  
At1g65440.1 68414.m07424 glycine-rich protein                          27   5.7  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    27   7.6  

>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +2

Query: 194 NNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDST 373
           +N +G  F G  ++  LR+DS+       V+N  + +  L     +N+N    D   D +
Sbjct: 60  DNFIGNFFTGAADSSSLRSDSTTCG----VNNSSDGQKQLGN---NNNNNSNKDIFLDRS 112

Query: 374 TVGKREIDDFGCENGLGGVGDSHSY 448
             G  EI      N +GG   S SY
Sbjct: 113 YGGFNEISQQHKSNDIGGGNSSGSY 137


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 329 SNDNGGGHDWLSDSTTVGKREIDDFG-CENGLGGV 430
           SN+N  G   L D++TVG   + + G   N LGGV
Sbjct: 425 SNNNFSGSLPLQDASTVGNLSLTNIGLSHNSLGGV 459


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 326  WSNDNGGGHD--WLSDSTTVGKREIDDFGCENGLGGVGDSHSYDS 454
            W + +GGG    W +DS   GK+  +D G  +G GG G     +S
Sbjct: 1563 WGSGSGGGGSGGWGNDSG--GKKSSEDGGFGSGSGGGGSDWGNES 1605


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 200 GVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERS 307
           G+GF  +G  +       + ISSW +  H DL + S
Sbjct: 532 GLGFSLLGSSSKTSDHMPTEISSWSLEGHKDLGKLS 567


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,881,981
Number of Sequences: 28952
Number of extensions: 164750
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)