Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a17r
(340 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 1e-06
SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22) 30 0.42
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 29 1.3
SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7) 27 2.9
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 27 2.9
SB_35891| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=1.9) 27 2.9
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15) 27 3.9
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 27 3.9
SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98) 27 5.1
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73) 27 5.1
SB_9891| Best HMM Match : KE2 (HMM E-Value=1) 26 6.8
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6) 26 9.0
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 48.8 bits (111), Expect = 1e-06
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = -2
Query: 276 LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNG 103
+ + F Q D VR+ K D++ L Y L+KQAT G ++P +V AKW++W+
Sbjct: 13 VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCKTSRPGFWDIVGKAKWESWHQ 71
Query: 102 RKGISQDDAKKQYIENAEKLHSKY 31
+ Q+ A K Y++ L ++
Sbjct: 72 HGKMPQEKAMKIYVQELFSLDPEW 95
>SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)
Length = 300
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 41 WSFSAFSMYCFLASSWEM---PLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 208
WS F ++CFL W M PL P HL + + + S M+ C+Y E F
Sbjct: 22 WS-KLFDIFCFLIM-WGMTMSPLTPDQQIHLLKVCYDISYLLGDSTMMMCVYLEAGGTF 78
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 263 SNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSP-AVLWRAPSGRHGTVAKASP 87
S+RS + P P+ R + + T P +++T SP A R+PS K SP
Sbjct: 289 SSRSDSGDYSAAPPPLPERRMLNSTNTPTSPTLIVTHASPFASPGRSPSNSPRPSPKNSP 348
Query: 86 KTMPRSN 66
+T PRS+
Sbjct: 349 RTSPRSS 355
>SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +3
Query: 33 IWSGVSPH-FRCIASWHRLGRCLCDRSMPSTWRSPQDRWAGQC 158
+W G FR + RLGRC + R D W G+C
Sbjct: 446 LWCGYEKSAFRICDTKIRLGRCALSEQLDPARRVYWDTWRGKC 488
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 152 PSPAVLWRAPSGRHGTVAKASPKTMPR 72
P P +AP+ R GT ASP T P+
Sbjct: 207 PEPVPTPKAPASRPGTKRPASPSTPPK 233
>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
Length = 153
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 293 DNTKCLSTSNSNRSPIRLGTG-RPSPVTMRTLRCTPCTSR 177
DN CL T+ S+ + + GTG RP+ T+ T P +R
Sbjct: 78 DNGLCLPTTASSSAAVPAGTGARPAIFTLATPNRRPTETR 117
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 152 PSPAVLWRAPSGRHGTVAKASPKTMPR 72
P P +AP+ R GT ASP T P+
Sbjct: 31 PEPVPTPKAPASRPGTKRPASPSTPPK 57
>SB_35891| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=1.9)
Length = 138
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 2 FI*F*VIIYAYLEWSFSAFSMYCFLASSWEMPLRPFHAFHLALSTRPLGWA-MLTSPMVA 178
F F V++Y Y+ W F+ + L + +P+ P + L + + W+ ++ +
Sbjct: 34 FFVFRVLVYPYMYWRFAVYKNISLLEVPFNIPI-PCNVACFMLMSLQVNWSFVIIKGCLR 92
Query: 179 CLYR 190
LYR
Sbjct: 93 YLYR 96
>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
Length = 378
Score = 27.1 bits (57), Expect = 3.9
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -2
Query: 258 QVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS-GLVESAKWKAWNGR-KGISQ 85
Q+ D + K K S ++ L S + QAT+GD + + G +E + G GI+
Sbjct: 121 QMKDLLSRGKVKVSLQKHALLDSYFAQATLGDYDTDKHGLGYLEDLLGSTFFGHPSGINS 180
Query: 84 --DDAKKQYIENAEKLH 40
D ++ Y++ LH
Sbjct: 181 NIDVSETSYVQTVTMLH 197
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 152 PSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTH 27
P+P+V W PSG TV + + +N + + N+T + +
Sbjct: 328 PTPSVSWILPSGAIATVTSPASRVQVLANHTLVIGNATESEY 369
>SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = -2
Query: 321 ATTLPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS 142
A+T P ++ + VA + ++K SD+ +L L +A++GD ++A P
Sbjct: 280 ASTQRPSTPDIMSPTIGRRLSIVAHGQQRRRSKISDELSLVASLLIHEASVGDDDVALPE 339
Query: 141 GLVESAKWKAWN 106
+ S K+WN
Sbjct: 340 -VSLSDVMKSWN 350
>SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98)
Length = 809
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 122 SGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHK 24
SG V K +++P+ TSK + TP+ H+
Sbjct: 564 SGNGKAVEKPREESIPQQTTSKRDESKTPSQHR 596
>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
Length = 895
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 296 KDNTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSR 177
KD T ++ S S R+ + L GRP + +T T C S+
Sbjct: 64 KDLTNSIA-SGSERNSLHLQPGRPFRINTKTWPSTHCASK 102
>SB_9891| Best HMM Match : KE2 (HMM E-Value=1)
Length = 572
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 88 GDAFATVPCLPLGALHKTAGLG 153
GD A P LP ++H T GLG
Sbjct: 347 GDLAAPTPILPPQSVHNTGGLG 368
>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
Length = 810
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 338 VPIGTLQLPYLLISKDNTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCT 192
+P+G + P L K T S + + LGT P T+R+L CT
Sbjct: 114 LPLGAFKTPIALQGKQKT-LRSLVCTLTAETTLGTISPHKTTLRSLVCT 161
>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 145 QRSCGERQVEGMERSQRHLPRRCQEAIHRKCGETPLQIRINYYLELNK 2
+R+ ER + +E S L RRC E + RK P + +LN+
Sbjct: 167 RRNRSERSIVFLEHSV--LNRRCTERMPRKARSEPFSAFVRQQTQLNQ 212
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,381,265
Number of Sequences: 59808
Number of extensions: 267114
Number of successful extensions: 1046
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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