Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a16r
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0092 - 650534-650553,650638-651013,651125-651349                 29   3.3  
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    29   4.3  
11_06_0535 - 24740950-24741089,24741358-24741451,24741535-247416...    29   4.3  

>02_01_0092 - 650534-650553,650638-651013,651125-651349
          Length = 206

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 338 SNDNRGGHDWLSDSTTVGKREVDDFGSEDRLLYGVESDEDFV 463
           S+ +    D +S  +  G  + DD+G   RL   + +D DFV
Sbjct: 161 SSGSAADDDRMSSMSCSGSPDDDDYGGSSRLCQWITTDSDFV 202


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 362 DWLSDSTTVGKREVDDFGSEDRLLYGVESDEDFVQMLEKE 481
           DWLSDS  VGK ++       + +  V ++ D +Q  EKE
Sbjct: 840 DWLSDSGVVGKIKLASVQLAKKYMNRVATELDALQGTEKE 879


>11_06_0535 -
           24740950-24741089,24741358-24741451,24741535-24741690,
           24741782-24741841,24741930-24742142,24742423-24742492,
           24746129-24746463,24747616-24747647,24747749-24747776
          Length = 375

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 428 LLYGVESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQL 541
           LL+GVE D DF + L KE S   V  G+V  ++N +++
Sbjct: 305 LLFGVEDDMDFARELIKEES-VLVLPGSVIGLKNWIRI 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,615
Number of Sequences: 37544
Number of extensions: 257561
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)