Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a16r
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    29   2.9  
AC024776-3|AAK68466.1|  453|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF000193-1|AAB52891.1|  715|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z92838-7|CAB07405.1|  593|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    27   8.9  
AF286205-1|AAK28740.1|  593|Caenorhabditis elegans C kinase adap...    27   8.9  

>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 313 PLVQIIVNVNQPGADAAIIPQPVIVDESD--EVKPD 212
           PL  + + ++ PG  +A  P PV+  E D  +VKPD
Sbjct: 75  PLQAVDLKMDIPGTPSAAAPDPVVKQEVDDEDVKPD 110


>AC024776-3|AAK68466.1|  453|Caenorhabditis elegans Hypothetical
           protein Y41D4B.16 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 533 LQLSISLSGFDGASGSHSYDSNESNEEFH 619
           + L++ LSG  GA+ S++   ++ N++FH
Sbjct: 304 VNLTVQLSGQSGATDSYTTSGSQVNDDFH 332


>Z74031-3|CAA98455.1|  245|Caenorhabditis elegans Hypothetical
           protein F32D8.3 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -2

Query: 653 FDHCKQTKVSKNEIPRCFRCYRSCGCR 573
           F HC       N  P C +C   C CR
Sbjct: 69  FSHCACESTCNNPDPYCSKCEPGCTCR 95


>AF000193-1|AAB52891.1|  715|Caenorhabditis elegans Hypothetical
           protein T20B6.2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 106 PIIPSPAVTLPEELN*VICDTTCSNAMS 23
           P++P+P   +PEE+  ++ + T S+ MS
Sbjct: 579 PVVPAPPEVVPEEVKELVVEDTQSSLMS 606


>Z92838-7|CAB07405.1|  593|Caenorhabditis elegans Hypothetical
           protein T03D8.1a protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 298 IVNVNQPGADAAIIPQPVIVDES 230
           +V+  QP  DAAI+P P+  D+S
Sbjct: 30  LVSEQQPSFDAAIVPMPIPNDKS 52


>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +2

Query: 497 VCAGAVD---SVQNGLQLSISLSGFDGASGSHSY 589
           +CAGA +   ++   ++  ++L GFD A GS+SY
Sbjct: 358 ICAGAEEERVTMSEAVRELLTLEGFDQAPGSNSY 391


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +2

Query: 497 VCAGAVD---SVQNGLQLSISLSGFDGASGSHSY 589
           +CAGA +   ++   ++  ++L GFD A GS+SY
Sbjct: 358 ICAGAEEERVTMSEAVRELLTLEGFDQAPGSNSY 391


>AF286205-1|AAK28740.1|  593|Caenorhabditis elegans C kinase adapter
           1 protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 298 IVNVNQPGADAAIIPQPVIVDES 230
           +V+  QP  DAAI+P P+  D+S
Sbjct: 30  LVSEQQPSFDAAIVPMPIPNDKS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,074,241
Number of Sequences: 27780
Number of extensions: 199103
Number of successful extensions: 501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)