Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a14r
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    46   3e-07
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.92 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 12/230 (5%)
 Frame = -2

Query: 677 PHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALG----TANIFS 510
           P +AG+      G   ICGA++++    +TAAHC         +  + +G    ++   +
Sbjct: 173 PMMAGIKRTYEPGM--ICGATIISKRYVLTAAHCIIDENTT--KLAIVVGEHDWSSKTET 228

Query: 509 GGTRVTTSN-VQMHGSYNM----DTLHNDVAIIN-HNHVGFTNNIQRINLASGSNNXXXX 348
             T + + N V +H  Y++    D   ND+A++     + F + +    L          
Sbjct: 229 NATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFA 288

Query: 347 XXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTC 168
                  G    + +G  +   ++ +L ++T   C + +GN  I+ + +C   + G+  C
Sbjct: 289 GSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGN--IMVNAMCAY-AKGKDAC 345

Query: 167 SGDSGGPLTIGSGGSRQL--IGITSFGSAQGCQRGHPAGFARVTSFNSWI 24
             DSGGP+   +  +++L  IGI S+G+  G    +P G  +V S+  WI
Sbjct: 346 QMDSGGPVLWQNPRTKRLVNIGIISWGAECG---KYPNGNTKVGSYIDWI 392


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 669 CWTCDRTDEWQNFH 628
           CW CD+ +E++  H
Sbjct: 467 CWVCDQCEEYEYVH 480


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 408 LHQQHPAHQPSQWKQQ 361
           +H QHP  QP Q + Q
Sbjct: 172 MHTQHPHMQPQQGQHQ 187


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 669 CWTCDRTDEWQ 637
           CW CD+ +E++
Sbjct: 557 CWVCDQCEEYE 567


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 123 PSTDRYHIVRISSRL 79
           P+T+ Y+I+ +++RL
Sbjct: 116 PNTEEYYIIEVNARL 130


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 578 CWRTRRAQARQFTLALGTANI 516
           CW TR+    Q    +GT+N+
Sbjct: 459 CWDTRKEYIPQNLGVIGTSNL 479


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   RQLNSSPDPGVEGCDSGEAGRVASLATLS*SERC 104
           RQ N +   GV+GCD    GR      ++  ERC
Sbjct: 101 RQCNDT-SIGVDGCDLMCCGRGYKTQEVTVVERC 133


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   RQLNSSPDPGVEGCDSGEAGRVASLATLS*SERC 104
           RQ N +   GV+GCD    GR      ++  ERC
Sbjct: 102 RQCNDT-SIGVDGCDLMCCGRGYKTQEVTVVERC 134


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 301 EPTTNKNAK*ASRS 260
           EP TNKN K  SRS
Sbjct: 239 EPGTNKNGKFFSRS 252


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 498 PGAS---GEDVSCAKSEGELTSLGSPG 569
           PG S   GE  S A ++G  T+  SPG
Sbjct: 893 PGCSSKNGEPTSAAFAQGFATAASSPG 919


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 467 SYNMDTLHNDVAIINHNHVGFTNN 396
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 467 SYNMDTLHNDVAIINHNHVGFTNN 396
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/49 (24%), Positives = 18/49 (36%)
 Frame = +1

Query: 109 PIS*RLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTAL 255
           P+S  +PP P  +  P++      P  P    +       P V   T L
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTIL 807


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,374
Number of Sequences: 438
Number of extensions: 3692
Number of successful extensions: 24
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)