Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a14r
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    33   0.18 
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    32   0.32 
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator...    31   0.56 
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   3.0  
At3g56880.1 68416.m06327 VQ motif-containing protein contains PF...    29   3.0  
At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami...    28   6.9  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    28   6.9  
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    27   9.1  
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g...    27   9.1  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    27   9.1  

>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 82  P*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPS 195
           P   PN +IP    LPP+P++  PP  P   L P  P+
Sbjct: 284 PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPT 321


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 290 QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGG 126
           +++RQ++L++    +  R F  +   A+T  V G NG S C  +    L  G+GG
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISACDLEKLNVLGCGNGG 59


>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
           chromosome condensation (RCC1) family protein identical
           to zinc finger protein PRAF1 [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940.
          Length = 1103

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 206 TLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGH 66
           TL   G  GRS   G SGG L++ +  SR+L   +   S+    RGH
Sbjct: 121 TLISTGQGGRSKIDGWSGGGLSVDA--SRELTSSSPSSSSASASRGH 165


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 334 PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 203
           P    PP     PT   N   A +S P  P AP RL T  + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772


>At3g56880.1 68416.m06327 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 245

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 678 PPSCWTCDRTDEWQNFHLRSFLTDQHPLRDRRSLLEDQESPGSSVHPRS 532
           PPSC   DR+         SFL++ H    + +++ D  +P  S H +S
Sbjct: 168 PPSCGNLDRSSAVPTLDTSSFLSNHH----QENIITDLGAPTGSFHHQS 212


>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family
           protein low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 432

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 137 GSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSWIRA 18
           G  GSR+   IT F   Q C   H   +   T +N  IRA
Sbjct: 356 GGRGSRRRAFITHFTGCQPCSGDHNPSYDGDTCWNEMIRA 395


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 320 TSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLT 141
           +++A SG + +             V   + G +     T     S G +T  G SGG  T
Sbjct: 478 STEAGSGTSTETSSMGGGSAAAGGVSESSSGGSTAAGGT-SESASGGSATAGGASGGTYT 536

Query: 140 IGSGGS 123
             +GGS
Sbjct: 537 DSTGGS 542


>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 342 LGCRLRKDLRCCFGSQQPTKTPSEPP 265
           L C   KDLR CF    P   P  PP
Sbjct: 10  LSCLQFKDLRFCFRQYPPPPPPPPPP 35


>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
            P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
            subsp. vulgare]
          Length = 1225

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -2

Query: 188  SNGRSTCSGDSGGPLTIGSGGSRQLIGI 105
            SNG  TC GD G  L   SGG +Q I I
Sbjct: 1107 SNGYDTCCGDRGVQL---SGGQKQRIAI 1131


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 127 PPLPMVRGPPESPLQVLRPLEPS 195
           PP P + GPP + + V  P EPS
Sbjct: 77  PPSPSLTGPPPTTIPVSPPPEPS 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,250
Number of Sequences: 28952
Number of extensions: 268851
Number of successful extensions: 1139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)