Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a13f
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.28
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 29 0.37
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 0.86
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 2.0
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 2.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 3.5
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.6
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 26 4.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.6
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.6
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 4.6
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 8.0
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 8.0
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 8.0
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 8.0
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.0
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.9 bits (64), Expect = 0.28
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = +2
Query: 125 APIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPISVGPAIVDEFVPISVGPAIVDNPP 304
AP++ + + PA+ E +SV V P V P+ V PP
Sbjct: 550 APVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAP-EVPSVPQPPVAPVVPEAPSVPQPP 608
Query: 305 LAPVADSTPLVQIILNINQASSAPIVPGP 391
+APVA P V + AP VP P
Sbjct: 609 VAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637
Score = 29.5 bits (63), Expect = 0.37
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Frame = +2
Query: 107 PGVAGP--APIIDDFVPIAVGPA--IIDEFEPISVGPAI--VNEFEPISVGPA--IVDEF 262
P V P AP++ + + P + E + PA+ V E + PA +V E
Sbjct: 587 PSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV 646
Query: 263 VPISVGPAI--VDNPPLAPVADSTPLVQIILNINQASSAPIVPGPG 394
+ PA+ V P P + P+V + ++ Q + P+VP G
Sbjct: 647 PSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692
Score = 26.6 bits (56), Expect = 2.6
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Frame = +2
Query: 107 PGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPA--IVNEFEPISVGPAIVDEFVPISVG 280
P VA AP + V P ++ E + P + E + PA VP+
Sbjct: 577 PPVAPVAPEVPSVPQPPVAP-VVPEAPSVPQPPVAPVAPEVPSVPQRPA-----VPVVPE 630
Query: 281 PAIVDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 391
V PP APV P V + AP VP P
Sbjct: 631 APSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQP 667
Score = 26.2 bits (55), Expect = 3.5
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = +2
Query: 104 SPGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPISVGPAIVDE-FVPISVG 280
+P A P + + + PA+ F + A +P + P++ P+
Sbjct: 466 NPISAPEKPTSGESLSLNPPPAMPKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPE 525
Query: 281 PAIVDNPPLAPVADSTPLVQIILNINQASSAPIVP 385
V PP APVA P + Q +AP+VP
Sbjct: 526 APSVHQPPAAPVAPEVP------SAPQRPAAPVVP 554
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 203 PAIVNEFEPISVGPAIVDEFVPISVGPA--IVDNPPLAPVADSTPLVQIILNINQASSAP 376
P+++ P +V E + PA + P AP + P+V ++ Q + P
Sbjct: 507 PSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566
Query: 377 IVP 385
+VP
Sbjct: 567 VVP 569
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 29.5 bits (63), Expect = 0.37
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 367 ASLVDVQNDLHERSAVSNGGKRRVVYDSGSN-GDRYELVDDGRPNGDRFE 221
A+ D+QN S+ G V Y SG+ GDR +DDG + FE
Sbjct: 90 AAYKDIQNTQKSLVTQSSTGSANVAYISGNGPGDR-SFIDDGNYSASSFE 138
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 0.86
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 279 PTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATP 109
P+ +G+N + P GSN T A + + +S +G +SM P TP
Sbjct: 140 PSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLTP 196
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 339 CTRGVLSATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGP 160
CT TG LST PT T++S+ + P S S T + + + S+
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 288
Query: 159 TAI-GTKSSMMGAGPATP 109
T+I T +S P P
Sbjct: 289 TSIPPTGNSTTPVTPTVP 306
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -3
Query: 321 SATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTE---MGSNSSMMAGPTAI 151
S+T LST + P+ ++SST + + S+S + + + S+SS + PT+
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTST 286
Query: 150 GTKSSMMGAGPATPGLT 100
+ S + ++P T
Sbjct: 287 SSTISSSSSSSSSPTST 303
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -3
Query: 294 STIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPA 115
S+ + PT + SST++ + S+ + + M S+SS + PT+ + S + P+
Sbjct: 295 SSSSSPT---STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS 351
Query: 114 T 112
+
Sbjct: 352 S 352
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = -2
Query: 520 SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQND 341
S+ SN S + + DGA+ +G+ +DF V+ + +N D +G+N V ++ D
Sbjct: 342 SHSSNAS--ENIVDGAVTQANGIESDFTRVDHEPIIVNN--DDENGNNESENEEV-IEED 396
Query: 340 LHERSAVSNGGKRRVVYDSGSN 275
R+ ++ + +VV D N
Sbjct: 397 NLNRNVIAE-AQNQVVADEERN 417
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 321 SATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPT--EMGSNSSMMAGPTAIG 148
S++ A L++ + TNS+T A PT S+SLT + T + S+S+ + +
Sbjct: 77 SSSAASSSLTSSSSLASSSTNSTTSASPT---SSSLTSSSATSSSLASSSTTSSSLASSS 133
Query: 147 TKSSMMGAGPAT 112
SS + + T
Sbjct: 134 ITSSSLASSSIT 145
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -2
Query: 163 SDSDRYKVVDDGSRSGNAGTHQALSRAGDSNGHHGSEGQEEFHSFSSS 20
++ Y +D S + G H ++ + E +EEFH F S+
Sbjct: 160 TEDPSYGHSEDSEVSDDTGDHGSVDELESEREGNSGEEEEEFHGFESN 207
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 242 PAIVDEFVPISVGPAIVDNPPLAPVADSTPLVQIILNINQASSAPI 379
PAI DE + +DNP + + L++ +++INQAS + +
Sbjct: 178 PAIFDELQRSLSEVSNMDNPSFSKGLHTLHLLECLVDINQASGSDL 223
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 3.5
Identities = 18/77 (23%), Positives = 29/77 (37%)
Frame = -3
Query: 336 TRGVLSATGARGGLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPT 157
T ++TG+ G G T +S+ + GS + P +GS ++ T
Sbjct: 162 TTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTT 221
Query: 156 AIGTKSSMMGAGPATPG 106
A S A + PG
Sbjct: 222 ANSGFSFGKPATTSAPG 238
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 514 GSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRD 407
GSNV +++ GD + D N ++++ + DN GL D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 4.6
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 158 VGPAIIDEFEPISVGPAIVNEF--EPISVGPAIVDEFVPISVGPAIVDNPPLAPVADSTP 331
V P I+ EF P ++ E I+ +D + P I NP +A TP
Sbjct: 247 VCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTP 306
Query: 332 LVQIILNINQASSAPIVPG 388
L +++ N+ Q+S + G
Sbjct: 307 LPELVDNVVQSSPIDVRKG 325
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 4.6
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 232 DRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALSRAGDSNG-HHGS 56
+R ++ S+ N + + +G+ + R D S N+ + A+SRAG SNG + G+
Sbjct: 1496 ERSSEANHRTSNDNKRDEVTEGKDKNKR----QDISGESNSRQNNAISRAGRSNGSNRGN 1551
Query: 55 EGQE 44
+ ++
Sbjct: 1552 DSRD 1555
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 352 VQNDLHERSAVSNGGKRRVVYDSGSN 275
+ N+L RS+ +GGK R+ DS +
Sbjct: 3 LSNELFHRSSKDHGGKSRICLDSSED 28
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 193 NGLELIYDGRSDSDRYKVVDDGSRSGNAGTHQALSRAG 80
+G E +DG + + D +R GN T++A + G
Sbjct: 220 SGREWFWDGENAESDSSLNGDNTRGGNISTNRAFNNMG 257
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 4.6
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 577 RKSDSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNG 401
R ++ CG R + GSN S N+SN+ DN++ ND N+N+ N
Sbjct: 493 RHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNT 550
Query: 400 ID 395
D
Sbjct: 551 DD 552
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 4.6
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 577 RKSDSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNG 401
R ++ CG R + GSN S N+SN+ DN++ ND N+N+ N
Sbjct: 493 RHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNT 550
Query: 400 ID 395
D
Sbjct: 551 DD 552
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 4.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 310 GKRRVVYDS--GSNGDRYELVDDGRPNGDRFEFVDNGRSDGNGL 185
GKR VV S G+NG Y V G P G F+ + G +G+
Sbjct: 413 GKRNVVIVSSAGNNGPAYTTV--GAPGGTTFDVISVGAYVTSGM 454
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 8.0
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -2
Query: 571 SDSGCGNDGSRDDHWLGSNGSNVSNLDR--LGDGAIDNNHGLSNDFGFVNDNHGLRDNGI 398
S++ N + ++ + S S++S + LG +NN+ SN + N+N G +
Sbjct: 527 SNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQH 586
Query: 397 DTGSGDNRGRAS 362
S +G AS
Sbjct: 587 QQSSSSLQGLAS 598
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 184 ELIYDGRSDSDRYKVVDDGSR 122
EL+Y D DR+ V+D G R
Sbjct: 262 ELVYPKLLDDDRFYVLDSGER 282
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 478 GAIDNNHGLSNDFGFVNDNHGL 413
G ID N +S FGF+ N GL
Sbjct: 287 GIIDRNILVSRGFGFLKSNSGL 308
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2
Query: 430 NDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 314
ND D D GS + RASL QN +S N
Sbjct: 18 NDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALN 56
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.0
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -3
Query: 300 GLSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAG-PTEMGSNSSMMAGPTAIGTKSSMMGA 124
G+ +A P + +S++A PT ++S+ + G PT G+ G +A GT++
Sbjct: 443 GMEAMAMPPGV---TSSIAVPT---TSSMPLQGMPTMFGA-----PGVSAPGTEAP---- 487
Query: 123 GPATPGLTRPLVGP 82
G TPGLT P V P
Sbjct: 488 GTGTPGLTTPGVDP 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,454
Number of Sequences: 5004
Number of extensions: 34138
Number of successful extensions: 162
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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