Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a13f
(578 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 27 0.13
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 27 0.18
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 24 1.2
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 24 1.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.7
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 21 6.7
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 8.8
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 8.8
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 8.8
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 8.8
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 8.8
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 8.8
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 8.8
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 8.8
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 8.8
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 8.8
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 27.1 bits (57), Expect = 0.13
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = -2
Query: 520 SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASL 359
SN S ++ + + + +NN+ +N+ N+N+G DNG G+ +N +
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNN----NNNNGANDNGNGNGASNNNNNGDM 272
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 26.6 bits (56), Expect = 0.18
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 511 SNVSNLDRLGDGAIDNNHGLSNDFGF---VNDNHGLRDNGIDTGSGDN 377
S++ D+L D I LS D VN +HG++ +G + GD+
Sbjct: 664 SSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDS 711
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVNDNHGLRDNGIDT 392
I NN+ LSN++ + N+N+ +N +T
Sbjct: 82 ISNNNSLSNNYNY-NNNYNNYNNNYNT 107
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 160 RTCHHR*VRAHFRRTCHCQR 219
R HH AH RRT H R
Sbjct: 149 RCLHHDIENAHIRRTLHMNR 168
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 207 AGPTEMGSNSSMMA-GPTAIGTKSSMMGAGPATP 109
AG T+ + +++ G T +S G GPATP
Sbjct: 208 AGSTDASTPATVTTTGATTTLPAASATGTGPATP 241
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 293 DNPPLAPVADST 328
D PPL+P +DS+
Sbjct: 439 DQPPLSPQSDSS 450
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
+G++ +LV GD +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
+G++ +LV GD +F+ NG
Sbjct: 203 DGNQVDLVLSSETGGDLSDFITNG 226
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
+G++ +LV GD +F+ NG
Sbjct: 203 DGNQVDLVLSSETGGDLSDFITNG 226
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 180 SSMMAGPTAIGTKSSMM 130
+S +AG AIGT + MM
Sbjct: 275 NSTLAGGVAIGTAAGMM 291
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 82 ISNNNSLSNNYNYNNN 97
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 82 ISNNNSLSNNYNYNNN 97
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 82 ISNNNSLSNNYNYNNN 97
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 82 ISNNNSLSNNYNYNNN 97
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 82 ISNNNSLSNNYNYNNN 97
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 82 ISNNNSLSNNYNYNNN 97
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 82 ISNNNSLSNNYNYNNN 97
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 82 ISNNNSLSNNYNYNNN 97
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 315 ISNNNSLSNNYNYNNN 330
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 472 IDNNHGLSNDFGFVND 425
I NN+ LSN++ + N+
Sbjct: 315 ISNNNSLSNNYNYNNN 330
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,925
Number of Sequences: 438
Number of extensions: 2986
Number of successful extensions: 29
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -