Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a12r
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047...    31   0.45 
10_02_0174 - 6202334-6204922                                           30   1.4  
06_03_0804 + 24761974-24763196,24763674-24764019                       27   9.7  
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100...    27   9.7  

>03_06_0120 +
           31804301-31804412,31804525-31804631,31804714-31804756,
           31806069-31806187
          Length = 126

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 389 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPW 243
           W+++++        L   N    H   H + PP   Y Y+ IR K FPW
Sbjct: 43  WEKITYAGIVTCTLLAAYNLSKGHP--HFDEPP--AYPYLHIRNKEFPW 87


>10_02_0174 - 6202334-6204922
          Length = 862

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 323 AHQEEHHERPPFVPYEYMRIRTKRFPW-GDGQ-KSLFHNPHVNALPSGYEDDH*ITII 156
           A  E  H+      Y  M  +     W GDG   S+ +NPH+ A   GY+ D  ++II
Sbjct: 346 ASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQDFPVSII 403


>06_03_0804 + 24761974-24763196,24763674-24764019
          Length = 522

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 142 LVCKTFIYFKL--LKVKKIAIFFLRFIGLKFHFVIH 41
           L C + +Y  L   +V++   +  RF GL+ HFV H
Sbjct: 260 LYCGSSLYGNLSAARVREWMAYHARFFGLRSHFVFH 295


>03_06_0108 +
           31708713-31709079,31709258-31709822,31709933-31710015,
           31710231-31710319,31710486-31710559,31710654-31710704,
           31710807-31710883,31711454-31712031,31712388-31712555,
           31713364-31713417,31713456-31713467,31713554-31713715
          Length = 759

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 167 FSGHLHNRWEGHSHEGCGKGTSVHHPMGNALYECACI 277
           + GH H+  +GH+ +G   G   HH  G    +CA I
Sbjct: 153 YGGHGHH--QGHAQDGGAVGGDPHHG-GGGFLQCAVI 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,052,346
Number of Sequences: 37544
Number of extensions: 258242
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)