Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a12f
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    57   2e-09
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.0  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   6.0  

>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
 Frame = +1

Query: 154 WKRMSFFVAFPAIALGMLNAYLAH--QEEH--HERPPFVPYEYMRIRTKRFPWGDGQKSL 321
           WK++++++  PA+ L   NAY  +   +EH  H       Y +  +R K++PWGDG K+L
Sbjct: 57  WKKVTYYIGGPALILASANAYYIYCKHQEHAKHVEDTDPGYSFENLRFKKYPWGDGSKTL 116

Query: 322 FHNPHVNAL 348
           F N  VN L
Sbjct: 117 FWNDKVNHL 125


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 242 NVRH--LYLMNTCAFVQSVSHGVMDRSPFSTTLM*MPFPAVMKMTTK 376
           NVR   LY  +  AFV+ V+   +D S F++T   + +  +MK  +K
Sbjct: 92  NVRRKMLYASSRAAFVRCVTLAKLDESYFASTPEELDYQQIMKSLSK 138


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 247 PPFVPYEY-MRIRTKRFPWGDGQKSLFHNPHVNALPSGYEDDH*ITII 387
           PPF+P       R + +   +    ++ +P  + LP+G+ D H + I+
Sbjct: 297 PPFLPDNLGQENRGELYSHDNPTSMVYEHPKFDELPNGFIDTHELNIL 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,907
Number of Sequences: 5004
Number of extensions: 42739
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)