Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a12f
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.041
SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)                  32   0.29 
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            31   0.51 
SB_41317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   4.8  
SB_34802| Best HMM Match : SBP (HMM E-Value=7.9)                       28   6.3  
SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)                   27   8.3  
SB_54058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 292 FPWGDGQKSLFHNPHVN 342
           FPWGDG   LFHN H N
Sbjct: 2   FPWGDGDPPLFHNKHTN 18


>SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)
          Length = 226

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = -2

Query: 402 NFLKQNYCNLVVIFITAGKGIHMRVVEKGLLSITPWETLCTNAHVFIRYKWRT--FMVFL 229
           NF K    +L++++I A     +  +E GL S TP    CT+      YK+RT  F  FL
Sbjct: 129 NFTKAQK-SLLLLWIFAWMTFSVPFIEHGLRSTTPVTRSCTSMFTHGGYKFRTYYFPGFL 187

Query: 228 LVS*VGI 208
           LV+ + +
Sbjct: 188 LVTIISL 194


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = +1

Query: 214 YLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNPHVNALPSGYEDDH 372
           Y  H  E     P   Y Y R  T R P+ D +   +H P    +P      H
Sbjct: 174 YATHYAEQRPHDP-THYAYHRAYTGRIPYADHRGYRYHGPETRRMPQALHRPH 225


>SB_41317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 471 KRRKKIAIFLTFNNLKYMNVLQTNFLKQNYCNLVVIFITAGKGIHMRVVEKGLLS-ITPW 295
           +RR  + + + F NL+     +   L ++Y N+ V F+T   G H R  +  L S  +  
Sbjct: 163 ERRLLMDLCIPFVNLEVFGCPKYQELHEHYSNVHVSFMT---GAHERACKHHLYSTFSDT 219

Query: 294 ETLCTNAHVFIRYKW 250
              C  A V++  KW
Sbjct: 220 PKHCPKAEVYLFGKW 234


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 486  NFNPIKRRKKIAIFLTFNNLKYMNVLQTNFLKQNYCNLV 370
            +F  I+ RKK+ +F+  N L     LQ + L  ++C+ +
Sbjct: 1034 SFVAIEHRKKVCLFMALNKLNNDVTLQGSNLSLSFCDSI 1072


>SB_34802| Best HMM Match : SBP (HMM E-Value=7.9)
          Length = 283

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -2

Query: 471 KRRKKIAIFLTFNNLKYMNVLQTNFLKQNYCNLVVIFITAGKGIHMRVVEKGLLS-ITPW 295
           +RR  + + + F NL+     +   L ++Y N+ V F+T   G H +     L S  +  
Sbjct: 139 ERRLLMGLCIPFVNLEVFGCPKYQELHEHYSNMHVSFMT---GAHEKACRHHLYSTFSDT 195

Query: 294 ETLCTNAHVFIRYKW 250
              C  A V++  KW
Sbjct: 196 PKHCPKAEVYLFGKW 210


>SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 242 NVRHLYLMNTCAFVQSVSHG 301
           +V HL  +N C FV  VSHG
Sbjct: 821 HVAHLVQVNECYFVNQVSHG 840


>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
          Length = 420

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 310 QKSLFHNPHVNALPSGYEDD 369
           Q +LF+ PH N LPSG+  +
Sbjct: 131 QNNLFNIPHENELPSGFHSE 150


>SB_54058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 154 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFV 258
           WK +  F    A+ +     YL  +E H  +PPFV
Sbjct: 13  WKFLDVFRKEIAVTVFQSRHYLEFEEAHQTQPPFV 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,798
Number of Sequences: 59808
Number of extensions: 314885
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)