Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a11r
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 30 0.28
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.0
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 6.0
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 6.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc... 25 8.0
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 25 8.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 8.0
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 8.0
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 30.3 bits (65), Expect = 0.28
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = -2
Query: 316 HPTALFKFLYHFISTRWCMTPLVASVPPLSVSTILTTPKRRLAICSSAQTVAAITTHSTG 137
HP F FL+ F+S WCMT A+ + I + +A +A T+ G
Sbjct: 257 HPIG-FSFLFGFLSVAWCMTDYDAT------AHIAEEIENAAVRAPNAIALALSITYVLG 309
Query: 136 WGGNLIASTSAIASAVPLLISEEL 65
W N++ + + + + + LI+ EL
Sbjct: 310 WVFNIVLAFT-MGTDLDSLINSEL 332
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 417 WTGWISYHGLHWNIP 373
W GW Y +HW P
Sbjct: 434 WLGWTCYPSVHWAAP 448
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 590 CLRGHYPRIQRSCFFEILEYRQS 658
CL G R SCF+E L+++QS
Sbjct: 203 CLAGSLYRSCVSCFYEYLKWKQS 225
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 117 AIRLPPHPVECVVIAATVCAELQIASL 197
A RLPPH V+AA V A + + +L
Sbjct: 325 ANRLPPHEEALEVLAAVVLAHINVFNL 351
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.0
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 303 SAVGCTMQENINKSVVLISKLCYAECSSVDHGMIS-SLSNSTTKILLEPVPVSSVERLPL 479
S++ + S V + + SSV I+ SLS+S + P SSV +
Sbjct: 1041 SSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSS 1100
Query: 480 RSSVNKVEASTLTGCIYKVSLSS 548
SSV +ST+ +LSS
Sbjct: 1101 TSSVEGTASSTIAAAASAATLSS 1123
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 369 YAECSSVDHGMISSLSNSTTKILLEPVPVSSVERLPLRSSVNKVEASTLTGCIYKVSLSS 548
++ S+ ISS +S++ IL P P S+ + SS+ +S L+ I + +SS
Sbjct: 603 FSSASTSSPSSISSSISSSSTILSSPTP-STSSLMISSSSIISGSSSILSSSISTIPISS 661
Query: 549 KMT 557
++
Sbjct: 662 SLS 664
>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 290
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 77 NQQWYSRSYSRGRCDQVATPPS*MR 151
N+QW RSY C Q+ P S R
Sbjct: 147 NEQWSMRSYVSKNCIQMKIPASNQR 171
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 204 GVVRIVDTDKGGTEATRGVMHHLVEIKWYRNLKSAVGC 317
GV+++ D T M H V +WYR + +GC
Sbjct: 145 GVLKLADFGLSRDFGTPSHMSHQVITRWYRPPELFMGC 182
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -2
Query: 277 STRWCMTPLVASVPPLSVSTILTTPKRRLAICSSAQTVAAITTHSTGWGGN--LIASTSA 104
S+ ++ +VAS + + ++TP A SS+ V+++ + +T + + ++TS+
Sbjct: 223 SSSIALSSVVASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSS 282
Query: 103 IASAVP 86
ASA P
Sbjct: 283 SASASP 288
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = -1
Query: 548 AAKTDFIYATGQRASFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYTGTFRV 369
+AKT+++YA G+R F A PQ + + L+++ RR G ++V+ G+ +
Sbjct: 262 SAKTNWVYAKGER----FAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVF-GSDEL 316
Query: 368 TQLRN 354
++R+
Sbjct: 317 NKVRS 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,806
Number of Sequences: 5004
Number of extensions: 61816
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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