Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a11r
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52568| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)                   33   0.30 
SB_34597| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   29   3.7  
SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)             29   4.9  
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 29   4.9  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            28   8.5  
SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_52568| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
          Length = 323

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
 Frame = -2

Query: 319 VHPTALFKFLYHFISTRWCMTPLVASVPP----LSVSTILTTP--KRRLAICSSAQTVAA 158
           +H + +  F Y FI       P++ S+      L+++ +L  P  K + ++ SS+   ++
Sbjct: 200 IHGSWVHFFAYWFIHVSSMANPIIYSLRTQRFRLTLTLLLREPCGKSQPSMTSSSMVPSS 259

Query: 157 ITTHSTGWGGNLIASTSAIASAVPLLISEELFRTFQLSMLT 35
             THSTGW  +       +  AV +  S  +  +F  S L+
Sbjct: 260 GVTHSTGWTSSSTIKIIKVKPAVNVTSSAWMMTSFNGSALS 300


>SB_34597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 416 GQAGYHTMVYTGTFR-VTQLRNQNNRLVDIFLHRASNGALQIP 291
           G     T + TG+ R +TQ  + N+RL++ FL R ++GA  +P
Sbjct: 4   GMGKTETSIETGSTREITQTDHLNSRLLNAFLDRLNSGANDVP 46


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/68 (22%), Positives = 35/68 (51%)
 Frame = +3

Query: 321 MQENINKSVVLISKLCYAECSSVDHGMISSLSNSTTKILLEPVPVSSVERLPLRSSVNKV 500
           ++ +I+ +V+ +S L  ++  SVD   +      +TK+ ++   +    RL +R+ +  V
Sbjct: 476 LRNHIHNNVIAVSALGMSDHFSVDLQPVKRSKRPSTKLTVKRRDLRPSNRLAMRTYLEGV 535

Query: 501 EASTLTGC 524
           +  +L  C
Sbjct: 536 DVKSLLDC 543


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 296  IPVPLYFYKVVHDSSRRLGTAFISINNPYYTQAEARNLQFCTD 168
            + +PL+   +  D SR L  AF+ +++ Y  Q     L  C D
Sbjct: 1734 LEIPLFSLALAPDGSRELQQAFLKVSDHYLRQGNFHLLLECLD 1776


>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 405 SSLSNSTTKILLEPVPVSSVERLPLRSSVNKVEASTLTGCIYKVSLSSKMTP 560
           S ++ S+T   L  +P+S+   LPL SS++    S ++     +S+  K  P
Sbjct: 266 SDVATSSTTSTLPSLPISTSSGLPLISSIHPSRTSAMSPVTSSLSIICKAKP 317


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/68 (22%), Positives = 35/68 (51%)
 Frame = +3

Query: 321 MQENINKSVVLISKLCYAECSSVDHGMISSLSNSTTKILLEPVPVSSVERLPLRSSVNKV 500
           ++ +I+ +V+ +S L  ++  SVD   +      +TK+ ++   +    RL +R+ +  V
Sbjct: 187 LRNHIHNNVIAVSALGMSDHFSVDLQPVKRSKRPSTKLTVKRRDLRPSNRLAMRTYLEGV 246

Query: 501 EASTLTGC 524
           +  +L  C
Sbjct: 247 DVKSLLDC 254


>SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)
          Length = 387

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 4/137 (2%)
 Frame = -1

Query: 563 ARGHLAAKTDFIY-ATGQRASFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVY 387
           +RGH+A   D  +       +F+  N  PQ    N+  W RLE +  R + +      V 
Sbjct: 157 SRGHMAPAADCRFDQQAMSETFFLSNVVPQDLNNNSSFWYRLE-SYCRYLTKHYSDVHVV 215

Query: 386 TGTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVV---HDSSRRLGTAFISINN 216
           TG   +    ++N      F+     G   + VP + +K +    +    L  AFI  N 
Sbjct: 216 TGPLFLPSEEDENGG--KKFVKYEVIGDNNVAVPTHLFKAILAETEGKPALLGAFIVPNQ 273

Query: 215 PYYTQAEARNLQFCTDR 165
           P     + +  Q   ++
Sbjct: 274 PISFDRDLKEFQVSIEK 290


>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 30  KSVNIESWKVRNSSSEISNGTAEAIAEVDAIRLPPHPVECVVIA 161
           K++ ++ WK RN S          IAE D + +  H +E V+ A
Sbjct: 136 KNMVVQYWKERNPSDFPDGDVPFVIAEQDKVVIREHIIEAVISA 179


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -2

Query: 127 NLIASTSAIASAVPLLISEELFRTFQLSMLTDF*HKY 17
           +++AS+  +A A+P+L SE + RT++++  +   H Y
Sbjct: 654 HVVASSVLLALAIPMLPSEFVVRTYKITPRSQNAHAY 690


>SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1533

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 24  CQKSVNIESWKVRNSSSEISNGTAEAIAEVDAIRLPPHPV 143
           CQK  N     V    S + N +AEAI E D +    +P+
Sbjct: 807 CQKKENEPELSVIGKESILHNFSAEAIVEQDVVSAKQYPM 846


>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = -2

Query: 322 IVHPTALFKFLYHFISTRWCMTPLVASVPPLSVSTILT-TPKRRLAICSSAQTVAAITTH 146
           + +   L K L H   +   ++PLV S PP S +   T +P      CS  Q+  + T+ 
Sbjct: 392 VTNSALLPKCLQHGEQSSASVSPLVPSTPPCSQNVSGTQSPLFLQVTCSITQSTLSSTSF 451

Query: 145 STGWGGNL---IASTSAIASAVPLLISEEL 65
           +     +L   ++ TS++A+++  + +  L
Sbjct: 452 ADSLSKSLLSCVSLTSSLANSITTIANTPL 481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,053,280
Number of Sequences: 59808
Number of extensions: 498525
Number of successful extensions: 1228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)