Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a11r
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    30   1.4  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   3.2  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   3.2  
Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p...    28   7.5  
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical...    28   7.5  
AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical ...    28   7.5  
AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical ...    28   7.5  
AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical ...    28   7.5  
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -1

Query: 701 PSWIAGNFFPGVAVNSAYTQVSQRNMIAGFVGNALADRYVTSTQFLARGHLAAKTDFIYA 522
           PSW  G  F   + +  Y   SQR+   G   +       TS    + GH+     F+ A
Sbjct: 373 PSWYKGRSFSAASSHYPY---SQRSTSTGHFSSFSRPSQSTSMNIPSHGHVEELDGFLAA 429

Query: 521 TGQRASFY 498
           +GQ   F+
Sbjct: 430 SGQTNPFF 437


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 233 RRYRGDERSHAPPCRNKVVQEFEERRWMHDARKYQQV 343
           R YR  +RS +PP RN   +E   R  M   R++Q+V
Sbjct: 174 RNYRQRQRSGSPPVRNWRDEEENRRAEMWSKRRFQRV 210


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 101 YSRGRCDQVATPPS*MRC-YCGNGLC---RTADCEPPLGC 208
           + RG CD+  +P   M C + G+ +    RTA+CE P  C
Sbjct: 358 WKRGNCDEAGSPCEKMECGFWGSCVVKPDRTAECECPNRC 397


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 101 YSRGRCDQVATPPS*MRC-YCGNGLC---RTADCEPPLGC 208
           + RG CD+  +P   M C + G+ +    RTA+CE P  C
Sbjct: 366 WKRGNCDEAGSPCEKMECGFWGSCVVKPDRTAECECPNRC 405


>Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 208
           R ++ G   Q+A   S   C  G+ LCRT +C PP+ C
Sbjct: 608 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 643


>Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 208
           R ++ G   Q+A   S   C  G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577


>Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 208
           R ++ G   Q+A   S   C  G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577


>Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 208
           R ++ G   Q+A   S   C  G+ LCRT +C PP+ C
Sbjct: 608 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 643


>Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 208
           R ++ G   Q+A   S   C  G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577


>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
           protein R06F6.8a protein.
          Length = 1468

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 151 THSTGWGGNLIASTSAIASAVPLLISE 71
           TH   W G +IAS S  AS++P  + +
Sbjct: 167 THHVTWTGEIIASLSFRASSIPFSVDQ 193


>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
           protein R06F6.8b protein.
          Length = 1470

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 151 THSTGWGGNLIASTSAIASAVPLLISE 71
           TH   W G +IAS S  AS++P  + +
Sbjct: 167 THHVTWTGEIIASLSFRASSIPFSVDQ 193


>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
            protein Y67A10A.3 protein.
          Length = 1237

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -1

Query: 473  QPFNAGNWN-RLEQNLRRRIGQAGYHTMVYTGTFRVTQLRNQNNRLVDIFL--HRASNGA 303
            Q  N G++N R+EQ+LR   G        Y     V Q    ++RLV + L    A + A
Sbjct: 909  QQLNQGDYNIRVEQHLREESGHYDGFCKKYLYLISVDQADMGHSRLVALVLVVAHAMSAA 968

Query: 302  LQIPVPLYFYKV 267
            L      Y YK+
Sbjct: 969  LWTSCHYYSYKM 980


>AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 208
           R ++ G   Q+A   S   C  G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577


>AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 208
           R ++ G   Q+A   S   C  G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577


>AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 95  RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 208
           R ++ G   Q+A   S   C  G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 289 YHFISTRWCMTPLVASV 239
           YH I   WC TP++AS+
Sbjct: 883 YHEIFNEWCFTPMLASL 899


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,844,793
Number of Sequences: 27780
Number of extensions: 367286
Number of successful extensions: 1195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)