Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a11r
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   3.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   3.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 467 FNAGNWNRLEQ--NLRRRIGQAGYHTMV 390
           ++ GN+  ++   NLRRR+G   +HT +
Sbjct: 195 YSTGNFTCIQIVFNLRRRLGYHLFHTYI 222


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 497 FINAAPQWQP 468
           F+NAAP W P
Sbjct: 22  FVNAAPDWVP 31


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 497 FINAAPQWQP 468
           F+NAAP W P
Sbjct: 22  FVNAAPDWVP 31


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 390 LHWNIPRNTT 361
           LHW +P N+T
Sbjct: 301 LHWQLPHNST 310


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -1

Query: 197 EARNLQFCTDRCRNNNAFNWVG 132
           E   +     RC    AF+W+G
Sbjct: 353 EVAGVMRAVKRCNATGAFSWIG 374


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 581 LHICLRGHYPRIQRSCFFEILEYRQS*QLH 670
           LH  L+  YPR++   F    E RQ   LH
Sbjct: 103 LHEYLKFSYPRMRAPSFICENETRQGLTLH 132


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 576 HAVLSTGSSC 547
           HA LSTG SC
Sbjct: 133 HACLSTGGSC 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,571
Number of Sequences: 438
Number of extensions: 4758
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)