Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a11r
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa...    32   0.43 
At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to MAD...    29   2.3  
At2g26160.1 68415.m03139 F-box family protein contains F-box dom...    29   4.0  
At1g64030.1 68414.m07252 serpin family protein / serine protease...    29   4.0  
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put...    28   6.9  
At5g49050.1 68418.m06069 hypothetical protein                          27   9.2  

>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 525

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
 Frame = +3

Query: 300 KSAVGCTMQENIN----KSVVLISKL-CYAECSSVDHGMISSLSNSTTKILLEPVPVSSV 464
           + A G T++EN+N    K+V   S++ C A+ +S     I S  N+ TK+ L PVP S++
Sbjct: 17  RKASGLTLRENMNKTDGKNVPFCSRVGCTAKVTSTKRSRIGSTDNN-TKVGLPPVP-STL 74

Query: 465 ERLPLRSSVNK 497
            R  +  S ++
Sbjct: 75  NRKEIVGSSSR 85


>At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to
           MADS-box protein; PMID: 12837945; contains Pfam profile
           PF00319: SRF-type transcription factor (DNA-binding and
           dimerisation domain)
          Length = 260

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 473 QPFNAGNWNRLEQNLRRRIGQAGYHTMVYTGTFRVTQLRNQNNRLVD 333
           +P    N+N L  N  +   Q GY  +V  G +  +Q++NQ+   +D
Sbjct: 189 RPNQNPNFNHLSHNQYQYQQQFGYPILVQDGIYNPSQIQNQHEEWLD 235


>At2g26160.1 68415.m03139 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 359

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -1

Query: 368 TQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVVHDSSRRLGTAFISINNPYYTQAEAR 189
           T+++NQ    +DI LH+    AL +   +++  +   S  +  T  I ++   Y     R
Sbjct: 182 TKIKNQVEDFLDIILHKGQVYALDLTGAIWWISLSPLSLLQF-TPSIPMDYDGYDSCNKR 240

Query: 188 NLQFCTDRC 162
            +++C D C
Sbjct: 241 LVEYCGDLC 249


>At1g64030.1 68414.m07252 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311, serpin [Triticum
           aestivum] GI:871551; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 385

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 232 LSVSTILTTPKRRLAICSSAQTVAAITTHSTGWGGNLIA 116
           LS   + + PK    I S A   +AIT H+ G GG+L++
Sbjct: 17  LSGHVLSSAPKDSNVIFSPASINSAITMHAAGPGGDLVS 55


>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 894

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -1

Query: 605 NALADRYVTSTQFLAR-GHLAA--KTDFIYATGQRASFYFINAAPQ-WQPFNAGNWNRLE 438
           +AL  R + +T +L R G L    + D + AT  +   Y I+   + W P+N GNW+++ 
Sbjct: 170 SALELRKLMNTTYLTRQGSLQTFIRAD-VGATVNQGYRYGIDVFDRVWTPYNFGNWSQIS 228

Query: 437 QN 432
            N
Sbjct: 229 TN 230


>At5g49050.1 68418.m06069 hypothetical protein 
          Length = 150

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 321 MQENINKSVVLISKLCYAECS--SVDHGMISSLSNSTTKILLEPV 449
           ++E++NK+  L+ K C   CS  SV+   +  +      I+LE V
Sbjct: 101 VEEDLNKTADLVKKKCAEVCSAKSVEISSLEVIEGDPRNIMLEAV 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,886
Number of Sequences: 28952
Number of extensions: 342377
Number of successful extensions: 1038
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)