Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a11f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    29   0.54 
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    26   5.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.0  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    25   6.6  
SPCC297.04c |set7||histone lysine methyltransferase Set7 |Schizo...    25   6.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   8.8  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 395 LLTLLSGRSAVKTIISSQPIGCVVTVLSGNSHALLTL 505
           L  LLSG    +    S P+GC++ + S N++ + T+
Sbjct: 185 LKLLLSGNPVAEHETFSHPVGCLIVITSHNTNPMATV 221


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 116 WLLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVILVSLNLY 271
           W  F    S   ++ P S F+N+K S + PG      + S S     S+ L+
Sbjct: 299 WRSFSRHSSATYSNSPSSNFSNMKSSEVDPGSPPRIKSRSYSLSRSSSMKLF 350


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 68  WHCPPNFERIYQSQDNWLLFLTKMSLKTT 154
           + CP   ER+Y +  +W +FL     + T
Sbjct: 49  YQCPSKGERVYLALRHWFIFLATHKAQMT 77


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +1

Query: 211 DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQ 318
           DF  G    +N D  Q    YIHR       GNTGQ
Sbjct: 353 DFH-GVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQ 387


>SPCC297.04c |set7||histone lysine methyltransferase Set7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 388 WGDGSYGRILCKR*ELVPHD*DESDLYYQLD-LNNFLCGYIQVEADQDHR*LGMCNRFGN 212
           W +G  G  L     +  HD    ++Y++ D  NN++  Y   E   +     +C  +G+
Sbjct: 63  WSEGKQGLALGLG-SMFNHD-RHPNVYWKKDNRNNYISYYTLREIKTNEE---LCISYGD 117

Query: 211 HSWFD 197
           H WF+
Sbjct: 118 HLWFE 122


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 379 RHPNVASNLAVGTVSCQNNNLVTAN 453
           +H NVA +L +GT S Q++ +   N
Sbjct: 19  QHENVAEDLELGTASSQSDGIHETN 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,596
Number of Sequences: 5004
Number of extensions: 50087
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)