Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a11f
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31) 30 1.3
SB_49159| Best HMM Match : WD40 (HMM E-Value=1.4) 29 2.3
SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39) 29 3.0
SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 4.0
SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0) 28 7.0
SB_10373| Best HMM Match : PKD (HMM E-Value=5) 28 7.0
SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07) 27 9.2
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07) 27 9.2
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9) 27 9.2
>SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)
Length = 611
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/83 (24%), Positives = 41/83 (49%)
Frame = +2
Query: 350 SLAQDPAVRSVTPMLLLTLLSGRSAVKTIISSQPIGCVVTVLSGNSHALLTLTMTLNKPT 529
++ + P + + T +L+ +L+ S V ++ QP+ V ++ GN+ ++ LN
Sbjct: 282 AILKTPLLHTPTNVLVFSLVLADSLVGILL--QPLAVVYLLIEGNTCTVIDALTFLNVTV 339
Query: 530 LDASIITLLFVWDSSSTMYFILY 598
+ S+ T+ V S +Y LY
Sbjct: 340 IGVSLSTMALV---SLDLYLSLY 359
>SB_49159| Best HMM Match : WD40 (HMM E-Value=1.4)
Length = 249
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 492 ACELPESTVTTQPIGCDEIIVLTADRP 412
+CE P S +T +GC + +V+ D P
Sbjct: 100 SCEAPVSNITESSVGCHDNLVIIIDSP 126
>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
Length = 566
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Frame = +2
Query: 119 LLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVILVSLNLYISTEEII*V 298
LL LTK L T P+SL L KP +++ + ++ ++ L T++++ +
Sbjct: 43 LLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSL 102
Query: 299 --QLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSAVKTIIS-SQPIGCVVT 469
+L+ + +L + K LSL + + S+T LL S K ++S ++ + +
Sbjct: 103 TKKLLSLTKKLLSLTKKLLSLTK--KLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTK 160
Query: 470 VLSGNSHALLTLTMTL 517
L + LL+LT L
Sbjct: 161 KLLSLTKKLLSLTKKL 176
Score = 29.1 bits (62), Expect = 3.0
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Frame = +2
Query: 119 LLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVILVSLNLYISTEEII*V 298
LL LTK L T P+SL L KP +++ + ++ ++ L T++++ +
Sbjct: 422 LLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSL 481
Query: 299 --QLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSAVKTIIS-SQPIGCVVT 469
+L+ + +L + K LSL + + S+T LL S K ++S ++ + +
Sbjct: 482 TKKLLSLTKKLLSLTKKLLSLTK--KLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTK 539
Query: 470 VLSGNSHALLTLTMTL 517
L + LL+LT L
Sbjct: 540 KLLSLTKKLLSLTKKL 555
>SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1176
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/66 (22%), Positives = 35/66 (53%)
Frame = +2
Query: 245 VILVSLNLYISTEEII*VQLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSA 424
+I++ + IST II + + I V ++ +K LS + + V+P++ +L ++
Sbjct: 703 IIIIITSFVISTTVIIMIAITITVVLIISYNHKPLSSSSSTFAKRVSPLVFSPVLFPCNS 762
Query: 425 VKTIIS 442
+ ++S
Sbjct: 763 SRLVVS 768
>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
Length = 609
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 319 IRLNRGEQVLIACTGSGRTIRHPNVASNLAVGTVSCQNNNLVTANWL 459
IRL++ +L+ TGSG+T+ +A L V C L A ++
Sbjct: 266 IRLDKSNILLLGPTGSGKTLLAQTIARCLDVPFAICDCTALTQAGYV 312
>SB_10373| Best HMM Match : PKD (HMM E-Value=5)
Length = 230
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 377 SVTPMLLLTLLSGRSAVKTIISSQPIGCVVTVLSGNSHAL-LTLTMTLNKPTLDASIITL 553
S+T L LTL GRS T+ + V++ + L LTLT+TL +TL
Sbjct: 79 SLTLSLTLTLTLGRSVTLTLTLTLTGTLTVSLTLALTLTLTLTLTLTLTLTLTLTLTLTL 138
Query: 554 LFVWDSSSTMYFILYIGPALT 616
+ T+ + IG LT
Sbjct: 139 TLTLTLTLTLTLTIRIGRILT 159
>SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07)
Length = 887
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 433 NNLVTANWLRGNSAFGQLTCSSHAHHDAQQTNTRCFNNHFVIRVGFIV 576
NN+V +++ + A G C H ++ + R NH+++ + +V
Sbjct: 686 NNVVQKKFMKTHRAGGYGQCQRLVGHSFEKIHRRKEKNHYIVTMDLVV 733
>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
Length = 2435
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 71 HCPPNFERIYQSQDNWL-LFLTKMSLKTTSMPISLFNN 181
+CP NF+ Y+ + W+ L ++L + ++L NN
Sbjct: 1450 YCPMNFDEFYKQRRRWMPSTLANLALLISEWRVTLGNN 1487
>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
Length = 492
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 529 TRCFNNHFVIRVGFIVNNVFYPLYWSCF 612
TRCF +V V F+ N VF+ ++ CF
Sbjct: 44 TRCFR--YVYPVFFVCNPVFFAMFTRCF 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,257,284
Number of Sequences: 59808
Number of extensions: 398176
Number of successful extensions: 1044
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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