Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12a11f
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z71185-4|CAA94909.2| 483|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z49207-4|CAA89073.1| 195|Caenorhabditis elegans Hypothetical pr... 28 6.1
U64599-11|ABD94099.1| 324|Caenorhabditis elegans Regulator of g... 27 8.1
U64599-10|AAL11463.1| 424|Caenorhabditis elegans Regulator of g... 27 8.1
U64599-9|AAL65791.1| 782|Caenorhabditis elegans Regulator of g ... 27 8.1
U64599-7|AAL11462.1| 819|Caenorhabditis elegans Regulator of g ... 27 8.1
AY569308-1|AAS75452.1| 819|Caenorhabditis elegans RGS-7A protein. 27 8.1
AB080201-1|BAB85494.1| 782|Caenorhabditis elegans C2-RGS protei... 27 8.1
>U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical
protein F18E9.3 protein.
Length = 378
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 256 QPQPVYIHRGNYLSPTGN 309
QP+PV IH G Y PT N
Sbjct: 296 QPKPVVIHTGRYSGPTYN 313
>Z71185-4|CAA94909.2| 483|Caenorhabditis elegans Hypothetical
protein C35A5.7 protein.
Length = 483
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/77 (22%), Positives = 30/77 (38%)
Frame = +1
Query: 382 HPNVASNLAVGTVSCQNNNLVTANWLRGNSAFGQLTCSSHAHHDAQQTNTRCFNNHFVIR 561
HP V+ L + + ++ SA L C+ T+ F HF++
Sbjct: 27 HPYVSVILCLAGTAMNIVTVIVLTRPSMRSAVNSLLCAIALCDILVMTSVLVFVTHFLLF 86
Query: 562 VGFIVNNVFYPLYWSCF 612
G+ + Y +YW+ F
Sbjct: 87 AGYRCDPTDYNIYWAYF 103
>Z49207-4|CAA89073.1| 195|Caenorhabditis elegans Hypothetical
protein R07E3.7 protein.
Length = 195
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 416 VPTARLEATLG*RIVRPDPVQAIRTCSPRLR 324
+PT R E+T+G R P+P+ I T SP R
Sbjct: 39 LPT-RAESTIGIRPKIPNPIYTINTASPETR 68
>U64599-11|ABD94099.1| 324|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform e protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 157 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQ 318
D Y + S+M T N D+ S + NG G P+ + +HR S T T +
Sbjct: 18 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSE 72
>U64599-10|AAL11463.1| 424|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform c protein.
Length = 424
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 157 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQ 318
D Y + S+M T N D+ S + NG G P+ + +HR S T T +
Sbjct: 118 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSE 172
>U64599-9|AAL65791.1| 782|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform b protein.
Length = 782
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 157 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQ 318
D Y + S+M T N D+ S + NG G P+ + +HR S T T +
Sbjct: 476 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSE 530
>U64599-7|AAL11462.1| 819|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform a protein.
Length = 819
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 157 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQ 318
D Y + S+M T N D+ S + NG G P+ + +HR S T T +
Sbjct: 513 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSE 567
>AY569308-1|AAS75452.1| 819|Caenorhabditis elegans RGS-7A protein.
Length = 819
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 157 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQ 318
D Y + S+M T N D+ S + NG G P+ + +HR S T T +
Sbjct: 513 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSE 567
>AB080201-1|BAB85494.1| 782|Caenorhabditis elegans C2-RGS protein
protein.
Length = 782
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 157 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQ 318
D Y + S+M T N D+ S + NG G P+ + +HR S T T +
Sbjct: 476 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSE 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,171
Number of Sequences: 27780
Number of extensions: 298744
Number of successful extensions: 889
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -