Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12a10r
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   172   3e-44
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.93 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   2.8  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   3.7  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.5  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   8.6  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  172 bits (419), Expect = 3e-44
 Identities = 94/194 (48%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
 Frame = -2

Query: 610 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 431
           FHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ KVRAG
Sbjct: 14  FHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAG 72

Query: 430 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKK 254
           RGFTL E++AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP K  +
Sbjct: 73  RGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQ 132

Query: 253 VLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVG 74
             KG+A +      T +   ++P+ Q A +  A+PITE+ KNF A+  L   R+ A+  G
Sbjct: 133 PKKGDATDVSGAEQTDV-AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAYARYAG 190

Query: 73  IRAKRLKDAAENPD 32
            RA   K  AE  +
Sbjct: 191 ARAAFQKKRAEEAE 204


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +2

Query: 413  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 532
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 130 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 38
           N ++ ++LR A S A++VG   +R++   EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 247 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 134
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 432 VEDSLFVKLGPQD*TQYLPERLELL 358
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 169 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAE 41
           P     P  E+E      +YL   +S AK VG   ++L++A +
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,055
Number of Sequences: 5004
Number of extensions: 47885
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)